STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102373900Cathelicidin-related peptide Oh-Cath-like. (158 aa)    
Predicted Functional Partners:
LOC102374155
Cathelicidin-1.
  
 
 
0.961
NFKB1
Nuclear factor NF-kappa-B p105 subunit isoform X1.
   
 
  0.903
JUN
Transcription factor AP-1; Belongs to the bZIP family.
     
 0.902
RELA
Transcription factor p65.
   
 
 0.901
CXCR1
C-X-C chemokine receptor type 1; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.489
LOC102377860
Myeloid protein 1-like.
   
  
 0.487
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
      
 0.457
LOC102368263
HLA class II histocompatibility antigen, DRB1-15 beta chain-like.
   
   0.430
LOC102368015
DLA class II histocompatibility antigen, DR-1 beta chain-like.
   
   0.430
LOC102381926
H-2 class II histocompatibility antigen, E-S beta chain.
   
   0.430
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.