STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLU7pre-mRNA-splicing factor SLU7 isoform X1. (583 aa)    
Predicted Functional Partners:
CDC40
pre-mRNA-processing factor 17.
   
 0.998
PRPF18
pre-mRNA-splicing factor 18 isoform X1.
  
 0.998
CWC22
pre-mRNA-splicing factor CWC22 homolog.
   
 0.997
DHX38
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.997
SYF2
pre-mRNA-splicing factor SYF2.
   
 0.996
CRNKL1
Crooked neck-like protein 1 isoform X2.
   
 
 0.995
PRPF8
pre-mRNA-processing-splicing factor 8.
    
 
 0.995
SNRNP200
LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.995
CDC5L
Cell division cycle 5-like protein.
   
 
 0.994
BUD31
Protein BUD31 homolog.
    
 
 0.993
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.