STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMRTB1Doublesex- and mab-3-related transcription factor B1 isoform X1. (326 aa)    
Predicted Functional Partners:
KPTN
KICSTOR complex protein kaptin.
    
 0.625
SZT2
LOW QUALITY PROTEIN: KICSTOR complex protein SZT2.
    
 0.621
SOX18
Transcription factor SOX-18.
    
 0.602
SOX3
Transcription factor SOX-3.
    
 0.601
SOX7
Transcription factor SOX-7.
    
 0.601
ATRX
Transcriptional regulator ATRX isoform X1.
      
 0.600
SOX10
Transcription factor SOX-10.
    
 0.599
SOX8
Transcription factor SOX-8.
    
 0.599
SOX5
Transcription factor SOX-5 isoform X1.
    
 
 0.597
DEPDC5
GATOR complex protein DEPDC5 isoform X1.
   
 0.587
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.