STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA7Homeobox protein Hox-A7. (219 aa)    
Predicted Functional Partners:
HOXA6
Homeobox protein Hox-A6.
   
 
 0.944
HOXB5
Homeobox protein Hox-B5.
   
   0.907
HOXC5
Homeobox protein Hox-C5.
   
   0.907
HOXB6
Homeobox protein Hox-B6.
   
   0.828
HOXB7
Homeobox protein Hox-B7.
   
 
 0.793
HOXD4
Homeobox protein Hox-D4 isoform X1.
   
 
 0.734
LOC102384141
Homeobox protein Hox-C6.
   
 
 0.699
HOXA9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
 0.670
HOXC4
Homeobox protein Hox-C4.
    
 
 0.643
HOXB4
Homeobox protein Hox-B4.
   
 
 0.621
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.