STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPC6Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (525 aa)    
Predicted Functional Partners:
SDC2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.633
HS2ST1
Heparan sulfate 2-O-sulfotransferase 1.
     
 0.611
SLIT2
Slit homolog 2 protein.
    
 0.567
NOTUM
Palmitoleoyl-protein carboxylesterase NOTUM.
    
 0.552
LOC102385203
Palmitoleoyl-protein carboxylesterase notum2-like isoform X1.
    
 0.552
LOC102384916
Dentin sialophosphoprotein.
      
 0.540
EXT2
Exostosin-2 isoform X1; Belongs to the glycosyltransferase 47 family.
     
 0.534
B4GALT7
Beta-1,4-galactosyltransferase 7.
     
 0.523
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.498
LOC112547924
Desert hedgehog protein-like.
    
 0.498
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.