STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102375444Homeobox protein notochord. (149 aa)    
Predicted Functional Partners:
CHURC1
Protein Churchill.
      
 0.696
FZD4
Frizzled-4; Belongs to the G-protein coupled receptor Fz/Smo family.
      
 0.693
NDP
Norrin.
      
 0.547
LOC102371965
Brachyury protein homolog A-like.
    
 0.485
TBX19
T-box transcription factor TBX19.
    
 0.485
TBXT
Brachyury protein.
    
 0.485
FOXA2
LOW QUALITY PROTEIN: hepatocyte nuclear factor 3-beta.
    
 0.432
FOXA1
Hepatocyte nuclear factor 3-alpha.
    
 0.432
TBX21
T-box transcription factor TBX21.
    
 0.425
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.