STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102386894Coagulation factor XIII B chain. (689 aa)    
Predicted Functional Partners:
FGA
LOW QUALITY PROTEIN: fibrinogen alpha chain.
   
 0.908
FGB
Fibrinogen beta chain.
   
 0.871
HGD
Homogentisate 1,2-dioxygenase isoform X1.
   
    0.818
SERPIND1
Heparin cofactor 2; Belongs to the serpin family.
   
 
 0.803
FGG
Fibrinogen gamma chain.
   
 0.800
PROC
Vitamin K-dependent protein C isoform X1.
   
 0.774
HRG
Histidine-rich glycoprotein.
   
 0.768
SERPINC1
antithrombin-III isoform X1; Belongs to the serpin family.
   
 
 0.746
F2
Prothrombin isoform X1; Belongs to the peptidase S1 family.
   
 0.744
SERPINF2
Alpha-2-antiplasmin; Belongs to the serpin family.
   
 
 0.713
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.