LOC102386869 protein (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102386869

Interferon-induced GTP-binding protein Mx1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (547 aa)

Predicted Functional Partners:

GAK

0.985

ITSN2

0.869

DNAJC6

0.743

ITSN1

0.743

USP18

0.738

RSAD2

0.712

EIF2AK2

0.676

PRKN

0.655

PINK1

0.627

SH3GL1

0.559

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNAJC6	GAK	A0A1U7SI58	A0A1U7RVF6	Putative tyrosine-protein phosphatase auxilin isoform X1.	cyclin-G-associated kinase isoform X3.	0.978
DNAJC6	LOC102386869	A0A1U7SI58	A0A3Q0HHQ8	Putative tyrosine-protein phosphatase auxilin isoform X1.	Interferon-induced GTP-binding protein Mx1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.743
DNAJC6	PINK1	A0A1U7SI58	A0A3Q0FRC7	Putative tyrosine-protein phosphatase auxilin isoform X1.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.698
DNAJC6	PRKN	A0A1U7SI58	A0A1U8CZV2	Putative tyrosine-protein phosphatase auxilin isoform X1.	RBR-type E3 ubiquitin transferase.	0.696
DNAJC6	SH3GL1	A0A1U7SI58	A0A1U7R582	Putative tyrosine-protein phosphatase auxilin isoform X1.	endophilin-A2 isoform X1.	0.723
DNAJC6	USP18	A0A1U7SI58	A0A1U8D8E1	Putative tyrosine-protein phosphatase auxilin isoform X1.	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.	0.426
EIF2AK2	LOC102386869	A0A1U8CXQ8	A0A3Q0HHQ8	Interferon-induced, double-stranded RNA-activated protein kinase.	Interferon-induced GTP-binding protein Mx1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.676
EIF2AK2	RSAD2	A0A1U8CXQ8	A0A1U7RED2	Interferon-induced, double-stranded RNA-activated protein kinase.	LOW QUALITY PROTEIN: radical S-adenosyl methionine domain-containing protein 2.	0.870
EIF2AK2	USP18	A0A1U8CXQ8	A0A1U8D8E1	Interferon-induced, double-stranded RNA-activated protein kinase.	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.	0.746
GAK	DNAJC6	A0A1U7RVF6	A0A1U7SI58	cyclin-G-associated kinase isoform X3.	Putative tyrosine-protein phosphatase auxilin isoform X1.	0.978
GAK	ITSN1	A0A1U7RVF6	A0A3Q0GRB8	cyclin-G-associated kinase isoform X3.	Intersectin-1 isoform X3.	0.787
GAK	ITSN2	A0A1U7RVF6	A0A3Q0GX81	cyclin-G-associated kinase isoform X3.	Intersectin-2 isoform X1.	0.860
GAK	LOC102386869	A0A1U7RVF6	A0A3Q0HHQ8	cyclin-G-associated kinase isoform X3.	Interferon-induced GTP-binding protein Mx1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.985
GAK	PINK1	A0A1U7RVF6	A0A3Q0FRC7	cyclin-G-associated kinase isoform X3.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.698
GAK	PRKN	A0A1U7RVF6	A0A1U8CZV2	cyclin-G-associated kinase isoform X3.	RBR-type E3 ubiquitin transferase.	0.696
GAK	SH3GL1	A0A1U7RVF6	A0A1U7R582	cyclin-G-associated kinase isoform X3.	endophilin-A2 isoform X1.	0.974
GAK	USP18	A0A1U7RVF6	A0A1U8D8E1	cyclin-G-associated kinase isoform X3.	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.	0.436
ITSN1	GAK	A0A3Q0GRB8	A0A1U7RVF6	Intersectin-1 isoform X3.	cyclin-G-associated kinase isoform X3.	0.787
ITSN1	ITSN2	A0A3Q0GRB8	A0A3Q0GX81	Intersectin-1 isoform X3.	Intersectin-2 isoform X1.	0.956
ITSN1	LOC102386869	A0A3Q0GRB8	A0A3Q0HHQ8	Intersectin-1 isoform X3.	Interferon-induced GTP-binding protein Mx1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.743