STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs0069Hypothetical protein; Similar to YABI_ECOLI gi|1786252 percent identity 98 in 254 aa (Conserved in E.coli K-12). (254 aa)    
Predicted Functional Partners:
ECs3023
Hypothetical protein; Similar to YOHD_ECOLI gi|1788458 percent identity 99 in 204 aa (Conserved in E.coli K-12).
  
   
 0.917
ECs3893
Hypothetical protein; Similar to YGHB_ECOLI gi|1789384 percent identity 100 in 219 aa (Conserved in E.coli K-12).
 
   
 0.902
ECs2458
Hypothetical protein; Similar to YDJZ_ECOLI gi|1788049 percent identity 99 in 235 aa (Conserved in E.coli K-12).
  
  
 0.833
ECs3551
Hypothetical protein; Similar to B2689_ECOLI gi|1789045 percent identity 98 in 142 aa (Conserved in E.coli K-12).
      
 0.820
ECs2456
Hypothetical protein; Similar to YDJX_ECOLI gi|1788047 percent identity 96 in 252 aa (Conserved in E.coli K-12).
  
  
 0.667
ECs0068
Transcriptional regulator for ara operon; Similar to ARAC_ECOLI gi|1786251 percent identity 100 in 292 aa (Conserved in E.coli K-12).
     
 0.548
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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