STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs0149dnaK suppressor protein; Similar to DKSA_ECOLI gi|1786338 percent identity 100 in 151 aa (Conserved in E.coli K-12). (151 aa)    
Predicted Functional Partners:
ECs3950
RNA polymerase sigma 70 factor RpoD; Similar to RPOD_ECOLI gi|1789448 percent identity 99 in 613 aa (Conserved in E.coli K-12).
  
 
 
 0.958
ECs4060
Transcription elongation factor GreA; Similar to GREA_ECOLI gi|1789571 percent identity 100 in 153 aa (Conserved in E.coli K-12).
  
 
 
 0.939
ECs4524
RNA polymerase omega subunit; Similar to RPOZ_ECOLI gi|1790081 percent identity 100 in 91 aa (Conserved in E.coli K-12).
 
 
 
 0.931
ECs4248
Transcription elongation factor GreB; Similar to GREB_ECOLI gi|1789810 percent identity 98 in 170 aa (Conserved in E.coli K-12).
  
 
 
 0.903
ECs4911
RNA polymerase beta prime subunit; Similar to RPOC_ECOLI gi|2367335 percent identity 99 in 1407 aa (Conserved in E.coli K-12).
    
 
 0.868
ECs4910
RNA polymerase beta subunit; Similar to RPOB_ECOLI gi|1790419 percent identity 100 in 1342 aa (Conserved in E.coli K-12).
  
 
 0.844
ECs4160
RNA polymerase, alpha subunit; Similar to RPOA_ECOLI gi|1789690 percent identity 100 in 329 aa (Conserved in E.coli K-12).
  
 
 0.826
ECs3644
(p)ppGpp synthetase I; Similar to RELA_ECOLI gi|1789147 percent identity 100 in 744 aa (Conserved in E.coli K-12).
      
 0.825
ECs0148
Putative tRNA synthetase; Similar to YADB_ECOLI gi|1786337 percent identity 99 in 308 aa (Conserved in E.coli K-12).
     
 0.734
ECs5148
Host factor I for bacteriophage Q beta replication; Similar to HFQ_ECOLI gi|1790614 percent identity 100 in 102 aa (Conserved in E.coli K-12).
   
  
 0.704
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.