STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs1029Dihydro-orotate dehydrogenase; Similar to PYRD_ECOLI gi|1787177 percent identity 100 in 336 aa (Conserved in E.coli K-12). (336 aa)    
Predicted Functional Partners:
ECs1440
Dihydro-orotase; Similar to PYRC_ECOLI gi|1787301 percent identity 99 in 348 aa (Conserved in E.coli K-12).
 
 
 0.996
ECs4517
Orotate phosphoribosyltransferase; Similar to PYRE_ECOLI gi|1790073 percent identity 99 in 213 aa (Conserved in E.coli K-12).
  
 0.991
ECs1854
Orotidine-5'-phosphate decarboxylase; Similar to PYRF_ECOLI gi|1787537 percent identity 98 in 245 aa (Conserved in E.coli K-12).
  
  
 0.924
ECs5222
Aspartate carbamoyltransferase catalytic subunit; Similar to PYRB_ECOLI gi|2367364 percent identity 100 in 311 aa (Conserved in E.coli K-12).
 
  
 0.916
ECs4772
Ferrisiderophore reductase; Similar to UBIB_ECOLI gi|2367314 percent identity 100 in 233 aa (Conserved in E.coli K-12).
  
 
 0.842
ECs0036
Carbamoyl-phosphate synthase large subunit; Similar to CARB_ECOLI gi|1786216 percent identity 99 in 1073 aa (Conserved in E.coli K-12).
 
 
 0.810
ECs0035
Carbamoyl-phosphate synthetase small subunit; Similar to CARA_ECOLI gi|1786215 percent identity 99 in 382 aa (Conserved in E.coli K-12).
 
  
 0.752
ECs2420
Phenylalanine tRNA synthetase beta-subunit; Similar to PHET_ECOLI gi|1788006 percent identity 99 in 795 aa (Conserved in E.coli K-12).
  
  
 0.651
ECs3359
Uracil transport; Similar to URAA_ECOLI gi|1788843 percent identity 100 in 429 aa (Conserved in E.coli K-12).
  
  
 0.639
ECs3360
Uracil phosphoribosyltransferase; Similar to UPP_ECOLI gi|1788844 percent identity 99 in 217 aa (Conserved in E.coli K-12).
   
  
 0.616
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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