STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs1305Unknown,similar to hypothetical protein A153R [Chlorella virus PBCV-1] gi|7461298|pir||T17644 percent identity 32 in 365 aa,also similar to DNA repair protein rad25 PAB0128 [Pyrococcus abyssi (strain Orsay)] gi|7514780|pir||A75209 percent identity 28. (786 aa)    
Predicted Functional Partners:
ECs5261
Probable ATP-dependent helicase,similar to putative ATP-dependent helicases e.g. [Halobacterium sp. (strain NRC-1) plasmid pNRC100] gi|7484100|pir||T08316 percent identity 26 in 597 aa.
   
 0.819
ECs4910
RNA polymerase beta subunit; Similar to RPOB_ECOLI gi|1790419 percent identity 100 in 1342 aa (Conserved in E.coli K-12).
   
  0.814
ECs4524
RNA polymerase omega subunit; Similar to RPOZ_ECOLI gi|1790081 percent identity 100 in 91 aa (Conserved in E.coli K-12).
   
  0.808
ECs4160
RNA polymerase, alpha subunit; Similar to RPOA_ECOLI gi|1789690 percent identity 100 in 329 aa (Conserved in E.coli K-12).
    
  0.803
ECs0877
Probably ATP-dependent helicase; Similar to DING_ECOLI gi|1787018 percent identity 99 in 716 aa (Conserved in E.coli K-12).
   
 0.753
ECs2517
Putative enzyme; Similar to B1808_ECOLI gi|1788110 percent identity 99 in 636 aa (Conserved in E.coli K-12).
   
 0.753
ECs4786
DNA polymerase I; Similar to POLA_ECOLI gi|1790294 percent identity 99 in 928 aa (Conserved in E.coli K-12).
  
 0.694
ECs3658
5'-3' exonuclease; Similar to EXO_ECOLI gi|1789162 percent identity 98 in 281 aa (Conserved in E.coli K-12).
    
 0.634
ECs1304
Unknown,weakly similar to hypothetical protein Cj1244 [Campylobacter jejuni] gi|6968677|emb|CAB73498.1| percent identity 25 in 78 aa.
     
 0.616
ECs4911
RNA polymerase beta prime subunit; Similar to RPOC_ECOLI gi|2367335 percent identity 99 in 1407 aa (Conserved in E.coli K-12).
   
  0.608
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.