STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs3438sigma-E factor regulatory protein RseA; Similar to RSEA_ECOLI gi|1788925 percent identity 97 in 212 aa (Conserved in E.coli K-12). (212 aa)    
Predicted Functional Partners:
ECs3437
sigma-E factor regulatory protein RseB; Similar to RSEB_ECOLI gi|1788924 percent identity 100 in 318 aa (Conserved in E.coli K-12).
 
 0.999
ECs3439
RNA polymerase sigma-E factor; Similar to RPOE_ECOLI gi|1788926 percent identity 100 in 191 aa (Conserved in E.coli K-12).
 
 0.999
ECs4108
Protease; Similar to DEGS_ECOLI gi|1789630 percent identity 100 in 355 aa (Conserved in E.coli K-12).
  
 
 0.978
ECs3436
sigma-E factor regulatory protein RseC; Similar to RSEC_ECOLI gi|1788923 percent identity 99 in 159 aa (Conserved in E.coli K-12).
 
  
 0.953
ECs0178
Hypothetical protein; Similar to YAEL_ECOLI gi|1786373 percent identity 100 in 450 aa (Conserved in E.coli K-12).
  
 
 
 0.884
ECs4101
Stringent starvation protein B; Similar to SSPB_ECOLI gi|1789623 percent identity 100 in 165 aa (Conserved in E.coli K-12).
  
 
 
 0.865
ECs0165
Periplasmic serine protease Do; Similar to HTRA_ECOLI gi|1786356 percent identity 100 in 474 aa (Conserved in E.coli K-12).
  
 
 0.858
ECs1449
Flagellin synthesis regulatory protein sigma-28 inhibitor flgM; Similar to FLGM_ECOLI gi|1787311 percent identity 98 in 97 aa (Conserved in E.coli K-12).
  
   
 0.851
ECs3950
RNA polymerase sigma 70 factor RpoD; Similar to RPOD_ECOLI gi|1789448 percent identity 99 in 613 aa (Conserved in E.coli K-12).
   
 
 0.805
ECs1852
Hypothetical protein; Similar to YCIS_ECOLI gi|1787535 percent identity 97 in 102 aa (Conserved in E.coli K-12).
  
     0.758
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.