STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs3460Putative yhbH sigma 54 modulator; Similar to YFIA_ECOLI gi|1788949 percent identity 100 in 113 aa (Conserved in E.coli K-12). (113 aa)    
Predicted Functional Partners:
ECs1037
Ribosome modulation factor; Identical to RMF_ECOLI gi|1787186 (Conserved in E.coli K-12).
   
 
 0.990
ECs2533
Cold shock protein; Identical to CSPC_ECOLI gi|1788126 (Conserved in E.coli K-12).
  
  
 0.905
ECs2534
Hypothetical protein; Identical to B1824_ECOLI gi|1788127 (Conserved in E.coli K-12).
   
    0.886
ECs4190
Protein chain elongation factor EF-Tu; Similar to TUFA_ECOLI gi|1789737 percent identity 99 in 394 aa, similar to TUFB_ECOLI gi|1790412 percent identity 99 in 393 aa (Conserved in E.coli K-12).
  
  
 0.866
ECs4903
Protein chain elongation factor EF-Tu; Similar to TUFB_ECOLI gi|1790412 percent identity 100 in 394 aa, similar to TUFA_ECOLI gi|1789737 percent identity 100 in 393 aa (Conserved in E.coli K-12).
  
  
 0.859
ECs1668
Cell division topological specificity factor MinE; Similar to MINE_ECOLI gi|1787422 percent identity 100 in 88 aa (Conserved in E.coli K-12).
  
    0.856
ECs0192
Hypothetical protein; Similar to YAEQ_ECOLI gi|1786388 percent identity 99 in 152 aa but differs at C-ter (Conserved in E.coli K-12).
   
    0.853
ECs1663
Outer membrane protease precursor,similar to outer membrane protease precursors e.g. protease VII precursor [Escherichia coli] gi|129161|sp|P09169|OMPT_ECOLI percent identity 98 in 317 aa.
   
    0.850
ECs3903
DNA topoisomerase IV subunit A; Similar to PARC_ECOLI gi|1789396 percent identity 100 in 752 aa (Conserved in E.coli K-12).
   
  
 0.838
ECs4103
30S ribosomal subunit protein S9; Similar to RPSI_ECOLI gi|1789625 percent identity 100 in 130 aa (Conserved in E.coli K-12).
   
 0.838
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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