STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs3731Similar to type III secretion proteins e.g. InvA [Salmonella typhimurium] gi|476819|pir||A42888 percent identity 64 in 686 aa; type III secretion protein. (686 aa)    
Predicted Functional Partners:
ECs3730
Similar to putative type III secretion proteins (ATP synthetase) e.g. invC [Salmonella typhimurium] gi|730791|sp|P39444|SPAL_SALTY percent identity 63 in 387 aa; type III secretion protein (ATP synthetase).
 
  
 0.984
ECs3725
Similar to type III secretion proteins e.g. SpaP [Salmonella enterica] gi|975755|gb|AAC43846.1| percent identity 69 in 218 aa; type III secretion protein.
 
 
 0.976
ECs3733
Similar to type III secretion proteins e.g. InvG [Salmonella typhimurium] gi|1170574|sp|P35672|INVG_SALTY percent identity 53 in 558 aa; type III secretion protein.
 
 
 0.969
ECs3724
Similar to type III secretion proteins e.g. SpaQ [Salmonella enterica] gi|975756|gb|AAC43847.1| percent identity 68 in 86 aa; type III secretion protein.
 
 
 0.963
ECs3721
Similar to type III secretion proteins e.g. SpaS protein [Salmonella typhimurium] gi|730801|sp|P40702|SPAS_SALTY percent identity 54 in 348 aa; type III secretion protein.
 
 
 0.954
ECs3732
Similar to type III secretion proteins e.g. invasion protein [Salmonella enterica] gi|1236845|gb|AAC45041.1| percent identity 37 in 355 aa; type III secretion protein.
  
  
 0.935
ECs4583
Type III secretion system EscR protein,identical to EscR (L0049) [Escherichia coli O157:H7 strain EDL933] gi|3414917|gb|AAC31528.1|.
 
 
 0.919
ECs4580
Type III secretion system EscU protein,identical to EscU (L0046) [Escherichia coli O157:H7 strain EDL933] gi|3414914|gb|AAC31525.1|.
 
  
 0.910
ECs4569
Type III secretion system EscV protein,identical to EscV (L0035) [Escherichia coli O157:H7 strain EDL933] gi|3414903|gb|AAC31514.1|.
  
  
 
0.909
ECs3716
Lipoprotein precursor (type III secretion system); similar to lipoprotein precursors in type III secretion system e.g. PrgK protein [Salmonella typhimurium] gi|1172615|sp|P41786|PRGK_SALTY percent identity 53 in 231 aa.
 
 
 0.908
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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