ECs3767 protein (Escherichia coli O157H7 Sakai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ECs3767

Flavodoxin 2; Similar to FLDB_ECOLI gi|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12). (173 aa)

Predicted Functional Partners:

ECs2000

0.806

ECs3766

0.571

ECs0634

0.543

ECs3764

0.536

ECs3765

0.536

Your Current Organism:

Escherichia coli O157H7 Sakai

NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECs0634	ECs3767	gene:10363622	gene:10366833	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Similar to ENTB_ECOLI gi\|1786811 percent identity 100 in 285 aa (Conserved in E.coli K-12).	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	0.543
ECs2000	ECs3767	gene:10365019	gene:10366833	Putative oxidoreductase; Similar to YDBK_ECOLI gi\|1787642 percent identity 99 in 1174 aa (Conserved in E.coli K-12).	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	0.806
ECs3764	ECs3765	gene:10366830	gene:10366831	ssDNA exonuclease RecJ; Similar to RECJ_ECOLI gi\|1789259 percent identity 99 in 577 aa (Conserved in E.coli K-12).	Protein disulfide isomerase II; Similar to DSBC_ECOLI gi\|1789260 percent identity 100 in 236 aa (Conserved in E.coli K-12).	0.792
ECs3764	ECs3766	gene:10366830	gene:10366832	ssDNA exonuclease RecJ; Similar to RECJ_ECOLI gi\|1789259 percent identity 99 in 577 aa (Conserved in E.coli K-12).	Site-specific recombinase; Similar to XERD_ECOLI gi\|1789261 percent identity 99 in 298 aa (Conserved in E.coli K-12).	0.734
ECs3764	ECs3767	gene:10366830	gene:10366833	ssDNA exonuclease RecJ; Similar to RECJ_ECOLI gi\|1789259 percent identity 99 in 577 aa (Conserved in E.coli K-12).	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	0.536
ECs3765	ECs3764	gene:10366831	gene:10366830	Protein disulfide isomerase II; Similar to DSBC_ECOLI gi\|1789260 percent identity 100 in 236 aa (Conserved in E.coli K-12).	ssDNA exonuclease RecJ; Similar to RECJ_ECOLI gi\|1789259 percent identity 99 in 577 aa (Conserved in E.coli K-12).	0.792
ECs3765	ECs3766	gene:10366831	gene:10366832	Protein disulfide isomerase II; Similar to DSBC_ECOLI gi\|1789260 percent identity 100 in 236 aa (Conserved in E.coli K-12).	Site-specific recombinase; Similar to XERD_ECOLI gi\|1789261 percent identity 99 in 298 aa (Conserved in E.coli K-12).	0.755
ECs3765	ECs3767	gene:10366831	gene:10366833	Protein disulfide isomerase II; Similar to DSBC_ECOLI gi\|1789260 percent identity 100 in 236 aa (Conserved in E.coli K-12).	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	0.536
ECs3766	ECs3764	gene:10366832	gene:10366830	Site-specific recombinase; Similar to XERD_ECOLI gi\|1789261 percent identity 99 in 298 aa (Conserved in E.coli K-12).	ssDNA exonuclease RecJ; Similar to RECJ_ECOLI gi\|1789259 percent identity 99 in 577 aa (Conserved in E.coli K-12).	0.734
ECs3766	ECs3765	gene:10366832	gene:10366831	Site-specific recombinase; Similar to XERD_ECOLI gi\|1789261 percent identity 99 in 298 aa (Conserved in E.coli K-12).	Protein disulfide isomerase II; Similar to DSBC_ECOLI gi\|1789260 percent identity 100 in 236 aa (Conserved in E.coli K-12).	0.755
ECs3766	ECs3767	gene:10366832	gene:10366833	Site-specific recombinase; Similar to XERD_ECOLI gi\|1789261 percent identity 99 in 298 aa (Conserved in E.coli K-12).	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	0.571
ECs3767	ECs0634	gene:10366833	gene:10363622	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Similar to ENTB_ECOLI gi\|1786811 percent identity 100 in 285 aa (Conserved in E.coli K-12).	0.543
ECs3767	ECs2000	gene:10366833	gene:10365019	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	Putative oxidoreductase; Similar to YDBK_ECOLI gi\|1787642 percent identity 99 in 1174 aa (Conserved in E.coli K-12).	0.806
ECs3767	ECs3764	gene:10366833	gene:10366830	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	ssDNA exonuclease RecJ; Similar to RECJ_ECOLI gi\|1789259 percent identity 99 in 577 aa (Conserved in E.coli K-12).	0.536
ECs3767	ECs3765	gene:10366833	gene:10366831	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	Protein disulfide isomerase II; Similar to DSBC_ECOLI gi\|1789260 percent identity 100 in 236 aa (Conserved in E.coli K-12).	0.536
ECs3767	ECs3766	gene:10366833	gene:10366832	Flavodoxin 2; Similar to FLDB_ECOLI gi\|1789262 percent identity 100 in 173 aa (Conserved in E.coli K-12).	Site-specific recombinase; Similar to XERD_ECOLI gi\|1789261 percent identity 99 in 298 aa (Conserved in E.coli K-12).	0.571

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About