ECs4025 protein (Escherichia coli O157H7 Sakai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ECs4025

Transposase (insertion sequence IS629),identical to gi|7443862|pir||T00240. (296 aa)

Predicted Functional Partners:

ECs4024

0.779

ECs4026

0.773

ECs4023

0.689

ECs4022

0.675

ECs4021

0.595

ECs4020

0.437

Your Current Organism:

Escherichia coli O157H7 Sakai

NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECs4020	ECs4021	gene:10367089	gene:10367090	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	0.873
ECs4020	ECs4022	gene:10367089	gene:10367091	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	0.877
ECs4020	ECs4023	gene:10367089	gene:10367092	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	Similar to N-terminal part (1-108 in 363 aa) of putative fimbrial protein YRAK_ECOLI gi\|1789534 percent identity 99 in 108 aa.	0.622
ECs4020	ECs4024	gene:10367089	gene:10367093	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	Transposase (insertion sequence IS629),identical to hypothetical protein gi\|7444868\|pir\|\|T00241.	0.437
ECs4020	ECs4025	gene:10367089	gene:10367094	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	Transposase (insertion sequence IS629),identical to gi\|7443862\|pir\|\|T00240.	0.437
ECs4020	ECs4026	gene:10367089	gene:10367095	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	Disrupted fimbrial protein; Similar to C-terminal part (226-363 in 363 aa) of YRAK_ECOLI gi\|1789534 percent identity 99 in 138 aa.	0.588
ECs4021	ECs4020	gene:10367090	gene:10367089	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	0.873
ECs4021	ECs4022	gene:10367090	gene:10367091	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	0.951
ECs4021	ECs4023	gene:10367090	gene:10367092	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	Similar to N-terminal part (1-108 in 363 aa) of putative fimbrial protein YRAK_ECOLI gi\|1789534 percent identity 99 in 108 aa.	0.739
ECs4021	ECs4024	gene:10367090	gene:10367093	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	Transposase (insertion sequence IS629),identical to hypothetical protein gi\|7444868\|pir\|\|T00241.	0.595
ECs4021	ECs4025	gene:10367090	gene:10367094	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	Transposase (insertion sequence IS629),identical to gi\|7443862\|pir\|\|T00240.	0.595
ECs4021	ECs4026	gene:10367090	gene:10367095	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	Disrupted fimbrial protein; Similar to C-terminal part (226-363 in 363 aa) of YRAK_ECOLI gi\|1789534 percent identity 99 in 138 aa.	0.684
ECs4022	ECs4020	gene:10367091	gene:10367089	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	0.877
ECs4022	ECs4021	gene:10367091	gene:10367090	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	0.951
ECs4022	ECs4023	gene:10367091	gene:10367092	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	Similar to N-terminal part (1-108 in 363 aa) of putative fimbrial protein YRAK_ECOLI gi\|1789534 percent identity 99 in 108 aa.	0.801
ECs4022	ECs4024	gene:10367091	gene:10367093	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	Transposase (insertion sequence IS629),identical to hypothetical protein gi\|7444868\|pir\|\|T00241.	0.675
ECs4022	ECs4025	gene:10367091	gene:10367094	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	Transposase (insertion sequence IS629),identical to gi\|7443862\|pir\|\|T00240.	0.675
ECs4022	ECs4026	gene:10367091	gene:10367095	Putative outer membrane protein; Similar to YRAJ_ECOLI gi\|1789533 percent identity 99 in 838 aa (Conserved in E.coli K-12).	Disrupted fimbrial protein; Similar to C-terminal part (226-363 in 363 aa) of YRAK_ECOLI gi\|1789534 percent identity 99 in 138 aa.	0.734
ECs4023	ECs4020	gene:10367092	gene:10367089	Similar to N-terminal part (1-108 in 363 aa) of putative fimbrial protein YRAK_ECOLI gi\|1789534 percent identity 99 in 108 aa.	Putative fimbrial-like protein; Similar to YRAH_ECOLI gi\|1789531 percent identity 94 in 194 aa (Conserved in E.coli K-12).	0.622
ECs4023	ECs4021	gene:10367092	gene:10367090	Similar to N-terminal part (1-108 in 363 aa) of putative fimbrial protein YRAK_ECOLI gi\|1789534 percent identity 99 in 108 aa.	Putative chaperone; Similar to YRAI_ECOLI gi\|1789532 percent identity 97 in 231 aa (Conserved in E.coli K-12).	0.739