ECs4673 protein (Escherichia coli O157H7 Sakai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ECs4673

Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12). (139 aa)

Predicted Functional Partners:

ECs4674

0.999

ECs4675

0.999

ECs4676

0.999

ECs4677

0.999

ECs4678

0.999

ECs4679

0.999

ECs4680

0.999

ECs3170

0.979

ECs5204

0.911

ECs0595

0.856

Your Current Organism:

Escherichia coli O157H7 Sakai

NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECs0595	ECs4673	gene:10363582	gene:10367753	Similar to SFMH_ECOLI gi\|1786745 percent identity 99 in 325 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	0.856
ECs0595	ECs4675	gene:10363582	gene:10367755	Similar to SFMH_ECOLI gi\|1786745 percent identity 99 in 325 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase gamma-subunit AtpG; Similar to ATPG_ECOLI gi\|1790171 percent identity 100 in 287 aa (Conserved in E.coli K-12).	0.836
ECs0595	ECs4676	gene:10363582	gene:10367756	Similar to SFMH_ECOLI gi\|1786745 percent identity 99 in 325 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase alpha-subunit AtpA; Similar to ATPA_ECOLI gi\|1790172 percent identity 100 in 513 aa (Conserved in E.coli K-12).	0.811
ECs0595	ECs4677	gene:10363582	gene:10367757	Similar to SFMH_ECOLI gi\|1786745 percent identity 99 in 325 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase delta-subunit AtpH; Similar to ATPH_ECOLI gi\|1790173 percent identity 100 in 177 aa (Conserved in E.coli K-12).	0.632
ECs0595	ECs4678	gene:10363582	gene:10367758	Similar to SFMH_ECOLI gi\|1786745 percent identity 99 in 325 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase subunit b AtpF; Similar to ATPF_ECOLI gi\|1790174 percent identity 99 in 156 aa (Conserved in E.coli K-12).	0.501
ECs3170	ECs4673	gene:10366213	gene:10367753	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	0.979
ECs3170	ECs4674	gene:10366213	gene:10367754	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase beta-subunit AtpD; Similar to ATPD_ECOLI gi\|1790170 percent identity 100 in 460 aa (Conserved in E.coli K-12).	0.947
ECs3170	ECs4675	gene:10366213	gene:10367755	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase gamma-subunit AtpG; Similar to ATPG_ECOLI gi\|1790171 percent identity 100 in 287 aa (Conserved in E.coli K-12).	0.982
ECs3170	ECs4676	gene:10366213	gene:10367756	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase alpha-subunit AtpA; Similar to ATPA_ECOLI gi\|1790172 percent identity 100 in 513 aa (Conserved in E.coli K-12).	0.984
ECs3170	ECs4677	gene:10366213	gene:10367757	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase delta-subunit AtpH; Similar to ATPH_ECOLI gi\|1790173 percent identity 100 in 177 aa (Conserved in E.coli K-12).	0.979
ECs3170	ECs4678	gene:10366213	gene:10367758	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase subunit b AtpF; Similar to ATPF_ECOLI gi\|1790174 percent identity 99 in 156 aa (Conserved in E.coli K-12).	0.880
ECs3170	ECs4679	gene:10366213	gene:10367759	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Similar to ATPE_ECOLI gi\|1790175 percent identity 100 in 79 aa (Conserved in E.coli K-12).	0.905
ECs3170	ECs4680	gene:10366213	gene:10367760	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Similar to ATPB_ECOLI gi\|1790176 percent identity 99 in 271 aa (Conserved in E.coli K-12).	0.841
ECs3170	ECs5204	gene:10366213	gene:10368319	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	Inorganic pyrophosphatase; Similar to PPA_ECOLI gi\|1790673 percent identity 100 in 176 aa (Conserved in E.coli K-12).	0.738
ECs4673	ECs0595	gene:10367753	gene:10363582	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	Similar to SFMH_ECOLI gi\|1786745 percent identity 99 in 325 aa (Conserved in E.coli K-12).	0.856
ECs4673	ECs3170	gene:10367753	gene:10366213	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	NADH dehydrogenase I chain C/D; Similar to NUOC_ECOLI gi\|1788622 percent identity 99 in 600 aa (Conserved in E.coli K-12).	0.979
ECs4673	ECs4674	gene:10367753	gene:10367754	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase beta-subunit AtpD; Similar to ATPD_ECOLI gi\|1790170 percent identity 100 in 460 aa (Conserved in E.coli K-12).	0.999
ECs4673	ECs4675	gene:10367753	gene:10367755	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase gamma-subunit AtpG; Similar to ATPG_ECOLI gi\|1790171 percent identity 100 in 287 aa (Conserved in E.coli K-12).	0.999
ECs4673	ECs4676	gene:10367753	gene:10367756	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase alpha-subunit AtpA; Similar to ATPA_ECOLI gi\|1790172 percent identity 100 in 513 aa (Conserved in E.coli K-12).	0.999
ECs4673	ECs4677	gene:10367753	gene:10367757	Membrane-bound ATP synthase epsilon-subunit AtpC; Similar to ATPC_ECOLI gi\|1790169 percent identity 99 in 139 aa (Conserved in E.coli K-12).	Membrane-bound ATP synthase delta-subunit AtpH; Similar to ATPH_ECOLI gi\|1790173 percent identity 100 in 177 aa (Conserved in E.coli K-12).	0.999

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About