ECs4908 protein (Escherichia coli O157H7 Sakai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ECs4908

50S ribosomal subunit protein L10; Similar to RPLJ_ECOLI gi|1790417 percent identity 100 in 165 aa (Conserved in E.coli K-12). (165 aa)

Predicted Functional Partners:

ECs0026

0.999

ECs0171

0.999

ECs1467

0.999

ECs2423

0.999

ECs2424

0.999

ECs3077

0.999

ECs3469

0.999

ECs3472

0.999

ECs3644

0.999

ECs3948

0.999

Your Current Organism:

Escherichia coli O157H7 Sakai

NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECs0026	ECs0171	gene:10363004	gene:10363149	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	0.984
ECs0026	ECs1467	gene:10363004	gene:10364478	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L32; Identical to RPMF_ECOLI gi\|1787330 (Conserved in E.coli K-12).	0.966
ECs0026	ECs2423	gene:10363004	gene:10365452	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L20; Similar to RPLT_ECOLI gi\|1788009 percent identity 100 in 118 aa (Conserved in E.coli K-12).	0.916
ECs0026	ECs2424	gene:10363004	gene:10365453	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein A; Identical to RPMI_ECOLI gi\|1788010 (Conserved in E.coli K-12).	0.902
ECs0026	ECs3077	gene:10363004	gene:10366118	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L25; Similar to RPLY_ECOLI gi\|1788512 percent identity 98 in 94 aa (Conserved in E.coli K-12).	0.947
ECs0026	ECs3469	gene:10363004	gene:10366523	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L19; Similar to RPLS_ECOLI gi\|1788958 percent identity 100 in 115 aa (Conserved in E.coli K-12).	0.944
ECs0026	ECs3472	gene:10363004	gene:10366526	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	30S ribosomal subunit protein S16; Similar to RPSP_ECOLI gi\|1788961 percent identity 100 in 82 aa (Conserved in E.coli K-12).	0.988
ECs0026	ECs3644	gene:10363004	gene:10366704	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	(p)ppGpp synthetase I; Similar to RELA_ECOLI gi\|1789147 percent identity 100 in 744 aa (Conserved in E.coli K-12).	0.999
ECs0026	ECs3948	gene:10363004	gene:10367016	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	30S ribosomal subunit protein S21; Identical to RPSU_ECOLI gi\|1789446 (Conserved in E.coli K-12).	0.990
ECs0026	ECs4908	gene:10363004	gene:10368015	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L10; Similar to RPLJ_ECOLI gi\|1790417 percent identity 100 in 165 aa (Conserved in E.coli K-12).	0.999
ECs0171	ECs0026	gene:10363149	gene:10363004	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	30S ribosomal subunit protein S20; Similar to RPST_ECOLI gi\|1786206 percent identity 98 in 87 aa (Conserved in E.coli K-12).	0.984
ECs0171	ECs1467	gene:10363149	gene:10364478	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L32; Identical to RPMF_ECOLI gi\|1787330 (Conserved in E.coli K-12).	0.966
ECs0171	ECs2423	gene:10363149	gene:10365452	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L20; Similar to RPLT_ECOLI gi\|1788009 percent identity 100 in 118 aa (Conserved in E.coli K-12).	0.988
ECs0171	ECs2424	gene:10363149	gene:10365453	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein A; Identical to RPMI_ECOLI gi\|1788010 (Conserved in E.coli K-12).	0.967
ECs0171	ECs3077	gene:10363149	gene:10366118	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L25; Similar to RPLY_ECOLI gi\|1788512 percent identity 98 in 94 aa (Conserved in E.coli K-12).	0.967
ECs0171	ECs3469	gene:10363149	gene:10366523	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L19; Similar to RPLS_ECOLI gi\|1788958 percent identity 100 in 115 aa (Conserved in E.coli K-12).	0.989
ECs0171	ECs3472	gene:10363149	gene:10366526	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	30S ribosomal subunit protein S16; Similar to RPSP_ECOLI gi\|1788961 percent identity 100 in 82 aa (Conserved in E.coli K-12).	0.994
ECs0171	ECs3644	gene:10363149	gene:10366704	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	(p)ppGpp synthetase I; Similar to RELA_ECOLI gi\|1789147 percent identity 100 in 744 aa (Conserved in E.coli K-12).	0.999
ECs0171	ECs3948	gene:10363149	gene:10367016	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	30S ribosomal subunit protein S21; Identical to RPSU_ECOLI gi\|1789446 (Conserved in E.coli K-12).	0.983
ECs0171	ECs4908	gene:10363149	gene:10368015	30S ribosomal subunit protein S2; Similar to RPSB_ECOLI gi\|1786365 percent identity 100 in 241 aa (Conserved in E.coli K-12).	50S ribosomal subunit protein L10; Similar to RPLJ_ECOLI gi\|1790417 percent identity 100 in 165 aa (Conserved in E.coli K-12).	0.999

page 1 of 6

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About