ECs4949 protein (Escherichia coli O157H7 Sakai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ECs4949

Hypothetical protein; unknown,GTG start. (93 aa)

Predicted Functional Partners:

ECs4948

0.773

ECs4950

0.773

ECs4951

0.773

ECs4946

0.766

ECs4952

0.762

ECs4947

0.746

ECs4945

0.583

ECs4944

0.562

ECs4953

0.515

ECs4954

0.515

Your Current Organism:

Escherichia coli O157H7 Sakai

NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECs4944	ECs4945	gene:10368055	gene:10368056	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	0.874
ECs4944	ECs4946	gene:10368055	gene:10368057	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Transposition protein,similar to DNA transposition protein B [Bacteriophage Mu] gi\|139318\|sp\|P03763\|VPB_BPMU percent identity 48 in 298 aa.	0.735
ECs4944	ECs4947	gene:10368055	gene:10368058	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Hypothetical protein; Unknown,weakly similar to phosphoserine phosphatase [Neisseria meningitidis MC58] gi\|7226221\|gb\|AAF41385.1\| percent identity 38 in 49 aa.	0.570
ECs4944	ECs4948	gene:10368055	gene:10368059	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Hypothetical protein.	0.552
ECs4944	ECs4949	gene:10368055	gene:10368060	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Hypothetical protein; unknown,GTG start.	0.562
ECs4944	ECs4950	gene:10368055	gene:10368061	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Hypothetical protein; unknown,GTG start.	0.552
ECs4944	ECs4951	gene:10368055	gene:10368062	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Hypothetical protein.	0.552
ECs4944	ECs4952	gene:10368055	gene:10368063	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	Probable host-nuclease inhibitor,similar to host-nuclease inhibitor proteins (Gam) e.g. [Bacteriophage Mu] gi\|138127\|sp\|P06023\|VGAM_BPMU percent identity 56 in 174 aa.	0.560
ECs4945	ECs4944	gene:10368056	gene:10368055	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	0.874
ECs4945	ECs4946	gene:10368056	gene:10368057	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Transposition protein,similar to DNA transposition protein B [Bacteriophage Mu] gi\|139318\|sp\|P03763\|VPB_BPMU percent identity 48 in 298 aa.	0.908
ECs4945	ECs4947	gene:10368056	gene:10368058	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Hypothetical protein; Unknown,weakly similar to phosphoserine phosphatase [Neisseria meningitidis MC58] gi\|7226221\|gb\|AAF41385.1\| percent identity 38 in 49 aa.	0.570
ECs4945	ECs4948	gene:10368056	gene:10368059	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Hypothetical protein.	0.552
ECs4945	ECs4949	gene:10368056	gene:10368060	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Hypothetical protein; unknown,GTG start.	0.583
ECs4945	ECs4950	gene:10368056	gene:10368061	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Hypothetical protein; unknown,GTG start.	0.552
ECs4945	ECs4951	gene:10368056	gene:10368062	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Hypothetical protein.	0.552
ECs4945	ECs4952	gene:10368056	gene:10368063	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	Probable host-nuclease inhibitor,similar to host-nuclease inhibitor proteins (Gam) e.g. [Bacteriophage Mu] gi\|138127\|sp\|P06023\|VGAM_BPMU percent identity 56 in 174 aa.	0.734
ECs4946	ECs4944	gene:10368057	gene:10368055	Transposition protein,similar to DNA transposition protein B [Bacteriophage Mu] gi\|139318\|sp\|P03763\|VPB_BPMU percent identity 48 in 298 aa.	Probable DNA-binding protein,similar to Ner-like DNA-binding proteins e.g. gi\|6900348\|emb\|CAB71960.1\| percent identity 44 in 70 aa.	0.735
ECs4946	ECs4945	gene:10368057	gene:10368056	Transposition protein,similar to DNA transposition protein B [Bacteriophage Mu] gi\|139318\|sp\|P03763\|VPB_BPMU percent identity 48 in 298 aa.	Probable phage transposase,similar to transposases e.g. [Neisseria meningitidis] gi\|7379960\|emb\|CAB84536.1\| percent identity 40 in 639 aa.	0.908
ECs4946	ECs4947	gene:10368057	gene:10368058	Transposition protein,similar to DNA transposition protein B [Bacteriophage Mu] gi\|139318\|sp\|P03763\|VPB_BPMU percent identity 48 in 298 aa.	Hypothetical protein; Unknown,weakly similar to phosphoserine phosphatase [Neisseria meningitidis MC58] gi\|7226221\|gb\|AAF41385.1\| percent identity 38 in 49 aa.	0.773
ECs4946	ECs4948	gene:10368057	gene:10368059	Transposition protein,similar to DNA transposition protein B [Bacteriophage Mu] gi\|139318\|sp\|P03763\|VPB_BPMU percent identity 48 in 298 aa.	Hypothetical protein.	0.746