OFLC_LOCUS6339 protein (Onchocerca flexuosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OFLC_LOCUS6339

Uncharacterized protein. (108 aa)

Predicted Functional Partners:

OFLC_LOCUS1211

0.938

A0A183I192

0.938

OFLC_LOCUS7159

0.936

OFLC_LOCUS3879

0.920

OFLC_LOCUS5262

0.915

A0A183I7G2

0.915

OFLC_LOCUS860

0.905

OFLC_LOCUS6839

0.905

A0A183I1S9

0.898

A0A183HRN4

0.891

Your Current Organism:

Onchocerca flexuosa

NCBI taxonomy Id: 387005
Other names: O. flexuosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183HRN4	A0A183I192	A0A183HRN4	A0A183I192	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A183HRN4	OFLC_LOCUS1211	A0A183HRN4	A0A183H151	Uncharacterized protein.	DUF3677 domain-containing protein.	0.993
A0A183HRN4	OFLC_LOCUS6339	A0A183HRN4	A0A183HFT1	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A183HRN4	OFLC_LOCUS6839	A0A183HRN4	A0A183HH77	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A183HRN4	OFLC_LOCUS7159	A0A183HRN4	A0A183HI48	Uncharacterized protein.	Uncharacterized protein.	0.906
A0A183HRN4	OFLC_LOCUS860	A0A183HRN4	A0A183H050	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A183I192	A0A183HRN4	A0A183I192	A0A183HRN4	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A183I192	A0A183I1S9	A0A183I192	A0A183I1S9	Uncharacterized protein.	RPOL4c domain-containing protein.	0.994
A0A183I192	A0A183I7G2	A0A183I192	A0A183I7G2	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.995
A0A183I192	OFLC_LOCUS1211	A0A183I192	A0A183H151	Uncharacterized protein.	DUF3677 domain-containing protein.	0.998
A0A183I192	OFLC_LOCUS3879	A0A183I192	A0A183H8R7	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A183I192	OFLC_LOCUS5262	A0A183I192	A0A183HCQ0	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A183I192	OFLC_LOCUS6339	A0A183I192	A0A183HFT1	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A183I192	OFLC_LOCUS6839	A0A183I192	A0A183HH77	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A183I192	OFLC_LOCUS7159	A0A183I192	A0A183HI48	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A183I192	OFLC_LOCUS860	A0A183I192	A0A183H050	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A183I1S9	A0A183I192	A0A183I1S9	A0A183I192	RPOL4c domain-containing protein.	Uncharacterized protein.	0.994
A0A183I1S9	A0A183I7G2	A0A183I1S9	A0A183I7G2	RPOL4c domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
A0A183I1S9	OFLC_LOCUS1211	A0A183I1S9	A0A183H151	RPOL4c domain-containing protein.	DUF3677 domain-containing protein.	0.961
A0A183I1S9	OFLC_LOCUS3879	A0A183I1S9	A0A183H8R7	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999