OFLC_LOCUS6669 protein (Onchocerca flexuosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OFLC_LOCUS6669

Uncharacterized protein. (109 aa)

Predicted Functional Partners:

OFLC_LOCUS7404

0.875

A0A183HTU5

0.875

X798_00041

0.686

OFLC_LOCUS7020

0.664

A0A183HTK2

0.657

A0A183I5U3

0.646

A0A183I6H4

0.646

A0A183HYB3

0.610

OFLC_LOCUS7454

0.609

A0A183I345

0.571

Your Current Organism:

Onchocerca flexuosa

NCBI taxonomy Id: 387005
Other names: O. flexuosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183HTK2	A0A183HYB3	A0A183HTK2	A0A183HYB3	Uncharacterized protein.	Uncharacterized protein.	0.589
A0A183HTK2	A0A183I6H4	A0A183HTK2	A0A183I6H4	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A183HTK2	OFLC_LOCUS6669	A0A183HTK2	A0A183HGQ8	Uncharacterized protein.	Uncharacterized protein.	0.657
A0A183HTK2	OFLC_LOCUS7020	A0A183HTK2	A0A183HHQ9	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A183HTU5	A0A183I6H4	A0A183HTU5	A0A183I6H4	Tr-type G domain-containing protein.	Uncharacterized protein.	0.937
A0A183HTU5	OFLC_LOCUS6669	A0A183HTU5	A0A183HGQ8	Tr-type G domain-containing protein.	Uncharacterized protein.	0.875
A0A183HTU5	OFLC_LOCUS7454	A0A183HTU5	A0A183HIZ7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.460
A0A183HTU5	X798_00041	A0A183HTU5	A0A183HZE9	Tr-type G domain-containing protein.	Putative translation elongation factor Tu.	0.649
A0A183HYB3	A0A183HTK2	A0A183HYB3	A0A183HTK2	Uncharacterized protein.	Uncharacterized protein.	0.589
A0A183HYB3	A0A183I5U3	A0A183HYB3	A0A183I5U3	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A183HYB3	A0A183I6H4	A0A183HYB3	A0A183I6H4	Uncharacterized protein.	Uncharacterized protein.	0.585
A0A183HYB3	OFLC_LOCUS6669	A0A183HYB3	A0A183HGQ8	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A183HYB3	OFLC_LOCUS7020	A0A183HYB3	A0A183HHQ9	Uncharacterized protein.	Uncharacterized protein.	0.605
A0A183I345	OFLC_LOCUS6669	A0A183I345	A0A183HGQ8	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.571
A0A183I345	OFLC_LOCUS7020	A0A183I345	A0A183HHQ9	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.536
A0A183I345	OFLC_LOCUS7454	A0A183I345	A0A183HIZ7	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.631
A0A183I5U3	A0A183HYB3	A0A183I5U3	A0A183HYB3	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A183I5U3	A0A183I6H4	A0A183I5U3	A0A183I6H4	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A183I5U3	OFLC_LOCUS6669	A0A183I5U3	A0A183HGQ8	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A183I5U3	OFLC_LOCUS7020	A0A183I5U3	A0A183HHQ9	Uncharacterized protein.	Uncharacterized protein.	0.561