Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIS_0587 | NIS_0588 | NIS_0587 | NIS_0588 | Conserved hypothetical protein. | ATPase, AAA family. | 0.867 |
NIS_0587 | NIS_0589 | NIS_0587 | NIS_0589 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.833 |
NIS_0587 | NIS_0590 | NIS_0587 | NIS_0590 | Conserved hypothetical protein. | Von Willebrand factor type A domain protein. | 0.948 |
NIS_0587 | NIS_0591 | NIS_0587 | NIS_0591 | Conserved hypothetical protein. | Von Willebrand factor type A domain protein. | 0.950 |
NIS_0587 | NIS_0593 | NIS_0587 | NIS_0593 | Conserved hypothetical protein. | Sulfate adenylyltransferase. | 0.773 |
NIS_0587 | NIS_0594 | NIS_0587 | NIS_0594 | Conserved hypothetical protein. | Two-component response regulator. | 0.773 |
NIS_0587 | ispDF | NIS_0587 | NIS_0595 | Conserved hypothetical protein. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. | 0.773 |
NIS_0587 | pgpA | NIS_0587 | NIS_0592 | Conserved hypothetical protein. | Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 0.773 |
NIS_0587 | thiC | NIS_0587 | NIS_0596 | Conserved hypothetical protein. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.538 |
NIS_0588 | NIS_0587 | NIS_0588 | NIS_0587 | ATPase, AAA family. | Conserved hypothetical protein. | 0.867 |
NIS_0588 | NIS_0589 | NIS_0588 | NIS_0589 | ATPase, AAA family. | Conserved hypothetical protein. | 0.787 |
NIS_0588 | NIS_0590 | NIS_0588 | NIS_0590 | ATPase, AAA family. | Von Willebrand factor type A domain protein. | 0.838 |
NIS_0588 | NIS_0591 | NIS_0588 | NIS_0591 | ATPase, AAA family. | Von Willebrand factor type A domain protein. | 0.840 |
NIS_0588 | NIS_0593 | NIS_0588 | NIS_0593 | ATPase, AAA family. | Sulfate adenylyltransferase. | 0.773 |
NIS_0588 | NIS_0594 | NIS_0588 | NIS_0594 | ATPase, AAA family. | Two-component response regulator. | 0.773 |
NIS_0588 | ispDF | NIS_0588 | NIS_0595 | ATPase, AAA family. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. | 0.775 |
NIS_0588 | pgpA | NIS_0588 | NIS_0592 | ATPase, AAA family. | Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 0.773 |
NIS_0588 | thiC | NIS_0588 | NIS_0596 | ATPase, AAA family. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.538 |
NIS_0589 | NIS_0587 | NIS_0589 | NIS_0587 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.833 |
NIS_0589 | NIS_0588 | NIS_0589 | NIS_0588 | Conserved hypothetical protein. | ATPase, AAA family. | 0.787 |
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