Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIS_0544 | NIS_0822 | NIS_0544 | NIS_0822 | Cell shape-determining protein MreC. | Conserved hypothetical protein. | 0.895 |
NIS_0544 | ftsZ | NIS_0544 | NIS_1033 | Cell shape-determining protein MreC. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.506 |
NIS_0544 | minD | NIS_0544 | NIS_0823 | Cell shape-determining protein MreC. | Cell division inhibitor MinD. | 0.716 |
NIS_0815 | NIS_0816 | NIS_0815 | NIS_0816 | Aspartate aminotransferase. | Serine O-acetyltransferase. | 0.801 |
NIS_0815 | NIS_0822 | NIS_0815 | NIS_0822 | Aspartate aminotransferase. | Conserved hypothetical protein. | 0.565 |
NIS_0815 | coaD | NIS_0815 | NIS_0820 | Aspartate aminotransferase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.796 |
NIS_0815 | hisS | NIS_0815 | NIS_0818 | Aspartate aminotransferase. | histidyl-tRNA synthetase. | 0.816 |
NIS_0815 | minD | NIS_0815 | NIS_0823 | Aspartate aminotransferase. | Cell division inhibitor MinD. | 0.562 |
NIS_0815 | minE | NIS_0815 | NIS_0824 | Aspartate aminotransferase. | Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.565 |
NIS_0815 | rtpR | NIS_0815 | NIS_0814 | Aspartate aminotransferase. | Conserved hypothetical protein. | 0.689 |
NIS_0815 | speA | NIS_0815 | NIS_0817 | Aspartate aminotransferase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.794 |
NIS_0816 | NIS_0815 | NIS_0816 | NIS_0815 | Serine O-acetyltransferase. | Aspartate aminotransferase. | 0.801 |
NIS_0816 | NIS_0822 | NIS_0816 | NIS_0822 | Serine O-acetyltransferase. | Conserved hypothetical protein. | 0.557 |
NIS_0816 | coaD | NIS_0816 | NIS_0820 | Serine O-acetyltransferase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.792 |
NIS_0816 | hisS | NIS_0816 | NIS_0818 | Serine O-acetyltransferase. | histidyl-tRNA synthetase. | 0.795 |
NIS_0816 | minD | NIS_0816 | NIS_0823 | Serine O-acetyltransferase. | Cell division inhibitor MinD. | 0.557 |
NIS_0816 | minE | NIS_0816 | NIS_0824 | Serine O-acetyltransferase. | Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.557 |
NIS_0816 | rtpR | NIS_0816 | NIS_0814 | Serine O-acetyltransferase. | Conserved hypothetical protein. | 0.686 |
NIS_0816 | speA | NIS_0816 | NIS_0817 | Serine O-acetyltransferase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.792 |
NIS_0822 | NIS_0544 | NIS_0822 | NIS_0544 | Conserved hypothetical protein. | Cell shape-determining protein MreC. | 0.895 |
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