Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SUN_0111 | SUN_0247 | Molybdenum cofactor biosynthesis protein E. | K+ transport system, NAD-binding component; Trk system. | 0.531 |
SUN_0111 | SUN_1892 | Molybdenum cofactor biosynthesis protein E. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.827 |
SUN_0245 | SUN_0246 | Nitrite reductase (NO-forming). | Hypothetical protein. | 0.813 |
SUN_0245 | SUN_0247 | Nitrite reductase (NO-forming). | K+ transport system, NAD-binding component; Trk system. | 0.467 |
SUN_0245 | SUN_0248 | Nitrite reductase (NO-forming). | K+ transport system, membrane component; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.467 |
SUN_0245 | SUN_0249 | Nitrite reductase (NO-forming). | Heme d1 biosynthesis protein NirF; Nitrite reductase (NO-forming). | 0.971 |
SUN_0246 | SUN_0245 | Hypothetical protein. | Nitrite reductase (NO-forming). | 0.813 |
SUN_0246 | SUN_0247 | Hypothetical protein. | K+ transport system, NAD-binding component; Trk system. | 0.696 |
SUN_0246 | SUN_0248 | Hypothetical protein. | K+ transport system, membrane component; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.672 |
SUN_0246 | SUN_0249 | Hypothetical protein. | Heme d1 biosynthesis protein NirF; Nitrite reductase (NO-forming). | 0.589 |
SUN_0246 | SUN_0250 | Hypothetical protein. | Conserved hypothetical protein. | 0.473 |
SUN_0247 | SUN_0111 | K+ transport system, NAD-binding component; Trk system. | Molybdenum cofactor biosynthesis protein E. | 0.531 |
SUN_0247 | SUN_0245 | K+ transport system, NAD-binding component; Trk system. | Nitrite reductase (NO-forming). | 0.467 |
SUN_0247 | SUN_0246 | K+ transport system, NAD-binding component; Trk system. | Hypothetical protein. | 0.696 |
SUN_0247 | SUN_0248 | K+ transport system, NAD-binding component; Trk system. | K+ transport system, membrane component; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.986 |
SUN_0247 | SUN_0249 | K+ transport system, NAD-binding component; Trk system. | Heme d1 biosynthesis protein NirF; Nitrite reductase (NO-forming). | 0.527 |
SUN_0247 | SUN_0250 | K+ transport system, NAD-binding component; Trk system. | Conserved hypothetical protein. | 0.527 |
SUN_0247 | SUN_1892 | K+ transport system, NAD-binding component; Trk system. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.480 |
SUN_0248 | SUN_0245 | K+ transport system, membrane component; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Nitrite reductase (NO-forming). | 0.467 |
SUN_0248 | SUN_0246 | K+ transport system, membrane component; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Hypothetical protein. | 0.672 |
page 1 of 2