STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutS2DNA mismatch repair protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (738 aa)    
Predicted Functional Partners:
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
   0.791
SUN_0146
Fibronectin/fibrinogen-binding protein.
 
     0.768
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
   0.739
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
 
   0.719
SUN_0994
DNA polymerase IV, family X.
  
  
 0.691
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.641
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 
   0.621
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
 
   0.618
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
   0.618
rpmI
50S ribosomal protein L35; Probable gene remnant. Similar to the N-terminal region of Thiomicrospira denitrificans ATCC 33889 DNA mismatch repair protein MutS (1020 aa) Tmden_1446; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.608
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum sp. NBC37-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.