Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SUN_0517 | SUN_2363 | SUN_0517 | SUN_2363 | GTP-binding protein. | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.534 |
SUN_0517 | pheT | SUN_0517 | SUN_0547 | GTP-binding protein. | phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.448 |
SUN_2362 | SUN_2363 | SUN_2362 | SUN_2363 | ATPase, AAA family. | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.799 |
SUN_2362 | SUN_2364 | SUN_2362 | SUN_2364 | ATPase, AAA family. | Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.807 |
SUN_2362 | ksgA | SUN_2362 | SUN_2366 | ATPase, AAA family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.566 |
SUN_2362 | rnj | SUN_2362 | SUN_2365 | ATPase, AAA family. | Conserved hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.581 |
SUN_2363 | SUN_0517 | SUN_2363 | SUN_0517 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein. | 0.534 |
SUN_2363 | SUN_2362 | SUN_2363 | SUN_2362 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | ATPase, AAA family. | 0.799 |
SUN_2363 | SUN_2364 | SUN_2363 | SUN_2364 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.778 |
SUN_2363 | der | SUN_2363 | SUN_1924 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein, Era/ThdF family; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.811 |
SUN_2363 | ksgA | SUN_2363 | SUN_2366 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.662 |
SUN_2363 | pheT | SUN_2363 | SUN_0547 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.551 |
SUN_2363 | rlmN | SUN_2363 | SUN_2369 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.558 |
SUN_2363 | rnj | SUN_2363 | SUN_2365 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Conserved hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.636 |
SUN_2363 | truB | SUN_2363 | SUN_0383 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.589 |
SUN_2363 | xthA | SUN_2363 | SUN_0644 | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease III. | 0.746 |
SUN_2364 | SUN_2362 | SUN_2364 | SUN_2362 | Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily. | ATPase, AAA family. | 0.807 |
SUN_2364 | SUN_2363 | SUN_2364 | SUN_2363 | Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily. | RNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.778 |
SUN_2364 | ksgA | SUN_2364 | SUN_2366 | Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.667 |
SUN_2364 | rlmN | SUN_2364 | SUN_2369 | Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily. | Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.439 |
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