TanjilG_23244 protein (Lupinus angustifolius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TanjilG_23244

Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (411 aa)

Predicted Functional Partners:

TanjilG_04795

0.999

TanjilG_28910

0.999

TanjilG_32983

0.999

TanjilG_26013

0.998

TanjilG_28569

0.998

TanjilG_26688

0.997

TanjilG_08173

0.996

TanjilG_11810

0.996

TanjilG_12210

0.995

TanjilG_03520

0.991

Your Current Organism:

Lupinus angustifolius

NCBI taxonomy Id: 3871
Other names: L. angustifolius, Lupinus angustifolius L., narrow-leaved blue lupine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TanjilG_03520	TanjilG_04795	A0A1J7FP00	A0A4P1QS85	Uncharacterized protein.	NUC153 domain-containing protein.	0.981
TanjilG_03520	TanjilG_08173	A0A1J7FP00	A0A1J7IMT6	Uncharacterized protein.	RRM domain-containing protein.	0.994
TanjilG_03520	TanjilG_11810	A0A1J7FP00	A0A4P1R673	Uncharacterized protein.	RRM domain-containing protein.	0.994
TanjilG_03520	TanjilG_12210	A0A1J7FP00	A0A1J7IFU3	Uncharacterized protein.	Uncharacterized protein.	0.907
TanjilG_03520	TanjilG_23244	A0A1J7FP00	A0A1J7HG77	Uncharacterized protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.991
TanjilG_03520	TanjilG_26013	A0A1J7FP00	A0A1J7GYR8	Uncharacterized protein.	Sas10 domain-containing protein.	0.927
TanjilG_03520	TanjilG_26688	A0A1J7FP00	A0A1J7I6Y8	Uncharacterized protein.	Uncharacterized protein.	0.923
TanjilG_03520	TanjilG_28569	A0A1J7FP00	A0A4P1RIR4	Uncharacterized protein.	Brix domain-containing protein.	0.999
TanjilG_03520	TanjilG_28910	A0A1J7FP00	A0A4P1QXX3	Uncharacterized protein.	Uncharacterized protein.	0.997
TanjilG_03520	TanjilG_32983	A0A1J7FP00	A0A4P1RNV0	Uncharacterized protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.998
TanjilG_04795	TanjilG_03520	A0A4P1QS85	A0A1J7FP00	NUC153 domain-containing protein.	Uncharacterized protein.	0.981
TanjilG_04795	TanjilG_08173	A0A4P1QS85	A0A1J7IMT6	NUC153 domain-containing protein.	RRM domain-containing protein.	0.888
TanjilG_04795	TanjilG_11810	A0A4P1QS85	A0A4P1R673	NUC153 domain-containing protein.	RRM domain-containing protein.	0.888
TanjilG_04795	TanjilG_12210	A0A4P1QS85	A0A1J7IFU3	NUC153 domain-containing protein.	Uncharacterized protein.	0.999
TanjilG_04795	TanjilG_23244	A0A4P1QS85	A0A1J7HG77	NUC153 domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.999
TanjilG_04795	TanjilG_26013	A0A4P1QS85	A0A1J7GYR8	NUC153 domain-containing protein.	Sas10 domain-containing protein.	0.999
TanjilG_04795	TanjilG_26688	A0A4P1QS85	A0A1J7I6Y8	NUC153 domain-containing protein.	Uncharacterized protein.	0.990
TanjilG_04795	TanjilG_28569	A0A4P1QS85	A0A4P1RIR4	NUC153 domain-containing protein.	Brix domain-containing protein.	0.999
TanjilG_04795	TanjilG_28910	A0A4P1QS85	A0A4P1QXX3	NUC153 domain-containing protein.	Uncharacterized protein.	0.929
TanjilG_04795	TanjilG_32983	A0A4P1QS85	A0A4P1RNV0	NUC153 domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.997

page 1 of 6

Server load: low (8%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About