STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TanjilG_09139Protein BCCIP homolog; Belongs to the BCP1 family. (307 aa)    
Predicted Functional Partners:
TanjilG_28569
Brix domain-containing protein.
   
  
 0.977
TanjilG_02237
Brix domain-containing protein.
   
    0.879
TanjilG_08173
RRM domain-containing protein.
   
    0.821
TanjilG_11810
RRM domain-containing protein.
   
    0.821
TanjilG_10793
RNase_PH domain-containing protein.
   
  
 0.813
TanjilG_31719
Uncharacterized protein.
   
    0.809
TanjilG_08790
Uncharacterized protein.
   
    0.809
TanjilG_13487
U1-type domain-containing protein.
   
  
 0.799
TanjilG_14905
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
    0.796
TanjilG_07955
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
    0.796
Your Current Organism:
Lupinus angustifolius
NCBI taxonomy Id: 3871
Other names: L. angustifolius, Lupinus angustifolius L., narrow-leaved blue lupine
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