TanjilG_09335 protein (Lupinus angustifolius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TanjilG_09335

MYND-type domain-containing protein. (633 aa)

Predicted Functional Partners:

TanjilG_11797

0.666

TanjilG_02368

0.652

TanjilG_16388

0.500

TanjilG_17432

0.500

TanjilG_14912

0.463

TanjilG_11114

0.448

TanjilG_06700

0.448

TanjilG_32350

0.448

TanjilG_31126

0.446

TanjilG_02566

0.446

Your Current Organism:

Lupinus angustifolius

NCBI taxonomy Id: 3871
Other names: L. angustifolius, Lupinus angustifolius L., narrow-leaved blue lupine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TanjilG_02368	TanjilG_02566	A0A1J7GA13	A0A394DEW2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Ubiquitin-like domain-containing protein.	0.980
TanjilG_02368	TanjilG_06700	A0A1J7GA13	A0A1J7I278	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.978
TanjilG_02368	TanjilG_09335	A0A1J7GA13	A0A4P1RMG7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	MYND-type domain-containing protein.	0.652
TanjilG_02368	TanjilG_11114	A0A1J7GA13	A0A1J7H551	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.978
TanjilG_02368	TanjilG_11797	A0A1J7GA13	A0A4P1R661	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.911
TanjilG_02368	TanjilG_14912	A0A1J7GA13	A0A1J7G6U7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.966
TanjilG_02368	TanjilG_16388	A0A1J7GA13	A0A1J7H7B9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	B30.2/SPRY domain-containing protein.	0.982
TanjilG_02368	TanjilG_17432	A0A1J7GA13	A0A4P1R1M6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	B30.2/SPRY domain-containing protein.	0.982
TanjilG_02368	TanjilG_31126	A0A1J7GA13	A0A1J7FW58	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Ubiquitin-like domain-containing protein.	0.980
TanjilG_02368	TanjilG_32350	A0A1J7GA13	A0A4P1R0F3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.978
TanjilG_02566	TanjilG_02368	A0A394DEW2	A0A1J7GA13	Ubiquitin-like domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.980
TanjilG_02566	TanjilG_06700	A0A394DEW2	A0A1J7I278	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.846
TanjilG_02566	TanjilG_09335	A0A394DEW2	A0A4P1RMG7	Ubiquitin-like domain-containing protein.	MYND-type domain-containing protein.	0.446
TanjilG_02566	TanjilG_11114	A0A394DEW2	A0A1J7H551	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.846
TanjilG_02566	TanjilG_11797	A0A394DEW2	A0A4P1R661	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.630
TanjilG_02566	TanjilG_14912	A0A394DEW2	A0A1J7G6U7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.949
TanjilG_02566	TanjilG_16388	A0A394DEW2	A0A1J7H7B9	Ubiquitin-like domain-containing protein.	B30.2/SPRY domain-containing protein.	0.876
TanjilG_02566	TanjilG_17432	A0A394DEW2	A0A4P1R1M6	Ubiquitin-like domain-containing protein.	B30.2/SPRY domain-containing protein.	0.876
TanjilG_02566	TanjilG_31126	A0A394DEW2	A0A1J7FW58	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.900
TanjilG_02566	TanjilG_32350	A0A394DEW2	A0A4P1R0F3	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.846