STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TanjilG_04392Helicase ATP-binding domain-containing protein. (983 aa)    
Predicted Functional Partners:
TanjilG_28606
Uncharacterized protein.
    
 0.978
TanjilG_32616
FHA domain-containing protein.
    
 0.976
TanjilG_13894
Uncharacterized protein.
   
 0.966
TanjilG_24409
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.966
TanjilG_12087
Uncharacterized protein.
    
 0.966
TanjilG_00569
Cyclin_C_2 domain-containing protein.
    
 0.965
TanjilG_17830
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.927
TanjilG_20063
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.917
TanjilG_21255
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.916
TanjilG_20437
Uncharacterized protein.
    
  0.915
Your Current Organism:
Lupinus angustifolius
NCBI taxonomy Id: 3871
Other names: L. angustifolius, Lupinus angustifolius L., narrow-leaved blue lupine
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