STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0079Glutamate decarboxylase; Belongs to the group II decarboxylase family. (479 aa)    
Predicted Functional Partners:
LVIS_0990
L-glutamine synthetase.
  
 
 0.967
LVIS_0078
Glutamate gamma-aminobutyrate antiporter.
 
  
 0.907
LVIS_1847
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
  
 
0.904
LVIS_1407
Dihydrolipoamide dehydrogenase.
   
 
  0.808
LVIS_1271
Glycine cleavage system H protein (lipoate-binding).
     
  0.800
LVIS_1590
Gamma-glutamylcysteine synthetase; Belongs to the glutamate--cysteine ligase type 1 family.
    
  0.800
LVIS_1951
Glycine cleavage system H protein (lipoate-binding).
     
  0.800
gltX1
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
     
 0.608
LVIS_0077
Transcriptional regulator.
 
     0.563
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
   
 
 0.422
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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