Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LVIS_0121 | LVIS_0122 | Transposase, IS30 family. | Hypothetical protein. | 0.636 |
LVIS_0122 | LVIS_0121 | Hypothetical protein. | Transposase, IS30 family. | 0.636 |
LVIS_0122 | LVIS_0209 | Hypothetical protein. | Predicted membrane protein. | 0.452 |
LVIS_0122 | LVIS_0870 | Hypothetical protein. | Hypothetical protein. | 0.465 |
LVIS_0122 | LVIS_1072 | Hypothetical protein. | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | 0.675 |
LVIS_0122 | LVIS_1080 | Hypothetical protein. | Hypothetical protein. | 0.470 |
LVIS_0122 | LVIS_1081 | Hypothetical protein. | Hypothetical protein. | 0.421 |
LVIS_0122 | LVIS_1085 | Hypothetical protein. | Hypothetical protein. | 0.463 |
LVIS_0122 | LVIS_1088 | Hypothetical protein. | SLT domain protein. | 0.583 |
LVIS_0122 | LVIS_1096 | Hypothetical protein. | Hypothetical protein. | 0.447 |
LVIS_0122 | LVIS_2019 | Hypothetical protein. | Transcriptional regulator, PadR family. | 0.458 |
LVIS_0209 | LVIS_0122 | Predicted membrane protein. | Hypothetical protein. | 0.452 |
LVIS_0870 | LVIS_0122 | Hypothetical protein. | Hypothetical protein. | 0.465 |
LVIS_1072 | LVIS_0122 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | Hypothetical protein. | 0.675 |
LVIS_1072 | LVIS_1080 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | Hypothetical protein. | 0.797 |
LVIS_1072 | LVIS_1081 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | Hypothetical protein. | 0.801 |
LVIS_1072 | LVIS_1085 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | Hypothetical protein. | 0.768 |
LVIS_1072 | LVIS_1088 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | SLT domain protein. | 0.874 |
LVIS_1072 | LVIS_1096 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase). | Hypothetical protein. | 0.658 |
LVIS_1080 | LVIS_0122 | Hypothetical protein. | Hypothetical protein. | 0.470 |
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