Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_0108 | LVIS_0128 | LVIS_0108 | LVIS_0128 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 2-dehydro-3-deoxygluconokinase. | 0.855 |
LVIS_0108 | LVIS_0144 | LVIS_0108 | LVIS_0144 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 6-phosphogluconate dehydrogenase (decarboxylating). | 0.800 |
LVIS_0108 | LVIS_0325 | LVIS_0108 | LVIS_0325 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 2-dehydro-3-deoxygluconokinase. | 0.848 |
LVIS_0108 | LVIS_0326 | LVIS_0108 | LVIS_0326 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Short-chain alcohol dehydrogenase. | 0.904 |
LVIS_0108 | LVIS_0441 | LVIS_0108 | LVIS_0441 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 2-dehydro-3-deoxygluconokinase. | 0.858 |
LVIS_0108 | uxuA | LVIS_0108 | LVIS_0146 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. | 0.933 |
LVIS_0128 | LVIS_0108 | LVIS_0128 | LVIS_0108 | 2-dehydro-3-deoxygluconokinase. | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.855 |
LVIS_0128 | LVIS_0325 | LVIS_0128 | LVIS_0325 | 2-dehydro-3-deoxygluconokinase. | 2-dehydro-3-deoxygluconokinase. | 0.903 |
LVIS_0128 | LVIS_0326 | LVIS_0128 | LVIS_0326 | 2-dehydro-3-deoxygluconokinase. | Short-chain alcohol dehydrogenase. | 0.864 |
LVIS_0128 | LVIS_0441 | LVIS_0128 | LVIS_0441 | 2-dehydro-3-deoxygluconokinase. | 2-dehydro-3-deoxygluconokinase. | 0.904 |
LVIS_0128 | uxuA | LVIS_0128 | LVIS_0146 | 2-dehydro-3-deoxygluconokinase. | D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. | 0.824 |
LVIS_0139 | LVIS_0145 | LVIS_0139 | LVIS_0145 | Fructuronate reductase. | Transcriptional regulator, GntR family. | 0.769 |
LVIS_0139 | uxaC | LVIS_0139 | LVIS_0135 | Fructuronate reductase. | D-glucuronate isomerase. | 0.973 |
LVIS_0139 | uxaC-2 | LVIS_0139 | LVIS_0150 | Fructuronate reductase. | D-glucuronate isomerase. | 0.974 |
LVIS_0139 | uxuA | LVIS_0139 | LVIS_0146 | Fructuronate reductase. | D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. | 0.989 |
LVIS_0144 | LVIS_0108 | LVIS_0144 | LVIS_0108 | 6-phosphogluconate dehydrogenase (decarboxylating). | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.800 |
LVIS_0144 | LVIS_0145 | LVIS_0144 | LVIS_0145 | 6-phosphogluconate dehydrogenase (decarboxylating). | Transcriptional regulator, GntR family. | 0.520 |
LVIS_0144 | LVIS_0326 | LVIS_0144 | LVIS_0326 | 6-phosphogluconate dehydrogenase (decarboxylating). | Short-chain alcohol dehydrogenase. | 0.800 |
LVIS_0144 | uxuA | LVIS_0144 | LVIS_0146 | 6-phosphogluconate dehydrogenase (decarboxylating). | D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. | 0.886 |
LVIS_0145 | LVIS_0139 | LVIS_0145 | LVIS_0139 | Transcriptional regulator, GntR family. | Fructuronate reductase. | 0.769 |
page 1 of 3