STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0293Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein). (310 aa)    
Predicted Functional Partners:
LVIS_0292
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 
 0.999
LVIS_0294
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 0.999
LVIS_0295
ABC-type proline/glycine betaine transport system, ATPase component.
 0.996
LVIS_0256
ABC-type proline/glycine betaine transport system, ATPase component.
 0.978
LVIS_0257
ABC-type proline/glycine betaine transport system, permease and substrate binding protein.
 
 
0.951
LVIS_0296
Hypothetical protein.
       0.483
LVIS_0291
Hypothetical protein.
       0.475
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.