STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0355Signal transduction histidine kinase. (446 aa)    
Predicted Functional Partners:
LVIS_0354
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 0.999
LVIS_0029
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
 0.876
LVIS_0631
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
 0.872
LVIS_1018
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
 0.862
LVIS_0317
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
 0.855
LVIS_2057
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
 0.818
LVIS_1316
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
 0.657
LVIS_1408
Acetoin/pyruvate dehydrogenase complex, E2 component, dihydrolipoamide succinyltransferase.
    
 0.485
LVIS_0356
Transcriptional regulator, LacI family.
     
 0.477
LVIS_0419
Hypothetical protein.
  
    0.443
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.