STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0366N-acetylmuramoyl-L-alanine amidase. (389 aa)    
Predicted Functional Partners:
LVIS_2128
Transcriptional regulator.
  
    0.771
LVIS_2271
Hypothetical protein.
  
     0.771
LVIS_0181
Hypothetical protein.
  
     0.767
LVIS_2083
Hypothetical protein.
  
     0.764
LVIS_0195
Hypothetical protein.
  
     0.763
LVIS_1381
Hypothetical protein.
  
     0.746
LVIS_2086
Hypothetical protein.
  
     0.746
LVIS_0889
ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.729
LVIS_1722
Predicted transcriptional regulator.
  
    0.727
LVIS_1815
Predicted membrane protein.
  
     0.727
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.