STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0625Predicted amidophosphoribosyltransferase. (225 aa)    
Predicted Functional Partners:
LVIS_0624
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
  
  
 0.927
LVIS_1395
Predicted hydrolase (metallo-beta-lactamase superfamily).
 
  
 0.762
LVIS_0797
Rossmann fold nucleotide-binding protein for DNA uptake.
 
 
 0.692
LVIS_0623
Hypothetical protein.
  
    0.683
hpf
SSU ribosomal protein S30P / sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.642
LVIS_1251
DNA repair protein.
 
    0.618
LVIS_1397
DNA uptake protein related DNA-binding protein.
  
  
 0.524
LVIS_0539
N-acetylglucosamine 6-phosphate deacetylase.
  
    0.498
LVIS_1198
Type II secretory pathway/competence component, ATPase.
  
  
 0.465
tagH
ABC-type polysaccharide/polyol phosphate transport system, ATPase component; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system.
   
    0.461
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.