STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0732N-acetylmuramoyl-L-alanine amidase. (283 aa)    
Predicted Functional Partners:
LVIS_0884
N-acetylmuramoyl-L-alanine amidase.
  
 
  0.905
LVIS_0731
Fructosamine-3-kinase.
       0.797
LVIS_0239
Periplasmic protease.
  
  
 0.751
LVIS_0998
Membrane-associated serine protease.
  
   0.648
hisS
histidyl-tRNA synthetase.
 
    0.594
LVIS_1417
Cell wall-associated hydrolase.
  
  
 0.580
LVIS_0962
Serine/threonine protein kinase with beta-lactam (PASTA) domains.
  
  
 0.566
LVIS_1248
Rod shape-determining protein MreD.
 
  
 0.530
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
  
 0.523
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
    0.515
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.