Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_0980 | LVIS_0982 | LVIS_0980 | LVIS_0982 | Hypothetical protein. | Aminopeptidase P; Belongs to the peptidase M24B family. | 0.632 |
LVIS_0980 | LVIS_0984 | LVIS_0980 | LVIS_0984 | Hypothetical protein. | Predicted ribosomal protein. | 0.610 |
LVIS_0980 | efp | LVIS_0980 | LVIS_0981 | Hypothetical protein. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.785 |
LVIS_0980 | rplU | LVIS_0980 | LVIS_0985 | Hypothetical protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.532 |
LVIS_0980 | rpmA | LVIS_0980 | LVIS_0983 | Hypothetical protein. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.610 |
LVIS_0982 | LVIS_0980 | LVIS_0982 | LVIS_0980 | Aminopeptidase P; Belongs to the peptidase M24B family. | Hypothetical protein. | 0.632 |
LVIS_0982 | LVIS_0984 | LVIS_0982 | LVIS_0984 | Aminopeptidase P; Belongs to the peptidase M24B family. | Predicted ribosomal protein. | 0.576 |
LVIS_0982 | efp | LVIS_0982 | LVIS_0981 | Aminopeptidase P; Belongs to the peptidase M24B family. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.770 |
LVIS_0982 | rplU | LVIS_0982 | LVIS_0985 | Aminopeptidase P; Belongs to the peptidase M24B family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.659 |
LVIS_0982 | rpmA | LVIS_0982 | LVIS_0983 | Aminopeptidase P; Belongs to the peptidase M24B family. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.662 |
LVIS_0984 | LVIS_0980 | LVIS_0984 | LVIS_0980 | Predicted ribosomal protein. | Hypothetical protein. | 0.610 |
LVIS_0984 | LVIS_0982 | LVIS_0984 | LVIS_0982 | Predicted ribosomal protein. | Aminopeptidase P; Belongs to the peptidase M24B family. | 0.576 |
LVIS_0984 | efp | LVIS_0984 | LVIS_0981 | Predicted ribosomal protein. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.518 |
LVIS_0984 | rplA | LVIS_0984 | LVIS_0589 | Predicted ribosomal protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.630 |
LVIS_0984 | rplC | LVIS_0984 | LVIS_1690 | Predicted ribosomal protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.514 |
LVIS_0984 | rplI | LVIS_0984 | LVIS_0018 | Predicted ribosomal protein. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.627 |
LVIS_0984 | rplJ | LVIS_0984 | LVIS_0590 | Predicted ribosomal protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.594 |
LVIS_0984 | rplU | LVIS_0984 | LVIS_0985 | Predicted ribosomal protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.947 |
LVIS_0984 | rpmA | LVIS_0984 | LVIS_0983 | Predicted ribosomal protein. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.976 |
LVIS_0984 | rpsB | LVIS_0984 | LVIS_1350 | Predicted ribosomal protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.684 |
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