STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_0987dUTPase. (180 aa)    
Predicted Functional Partners:
LVIS_0988
Hypothetical protein.
 
     0.948
LVIS_0989
Hypothetical protein.
 
     0.944
LVIS_2116
Transcriptional regulator, xre family.
  
    0.753
LVIS_0827
Transcriptional regulator, MarR family.
  
     0.730
LVIS_0157
Hypothetical protein.
  
     0.722
LVIS_0835
Pore-forming protein.
  
     0.691
LVIS_0250
Hypothetical protein.
  
     0.654
LVIS_0350
Hypothetical protein.
  
     0.622
LVIS_0986
Transcriptional regulator.
 
    0.572
LVIS_1273
Hypothetical protein.
  
     0.567
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.