STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1088SLT domain protein. (1895 aa)    
Predicted Functional Partners:
LVIS_1082
Phage Mu gp47 related protein.
 
     0.943
LVIS_1085
Hypothetical protein.
 
     0.941
LVIS_1081
Hypothetical protein.
 
     0.940
LVIS_1086
Hypothetical protein.
 
     0.939
LVIS_1080
Hypothetical protein.
 
     0.938
LVIS_1072
Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
 
     0.874
LVIS_1096
Hypothetical protein.
 
     0.833
LVIS_1101
Phage Mu protein F like protein.
 
     0.795
LVIS_1102
Phage portal protein, SPP1 Gp6-like.
 
     0.786
LVIS_1087
Muramidase (flagellum-specific).
       0.768
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.