Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1102Phage portal protein, SPP1 Gp6-like. (507 aa)    
Predicted Functional Partners:
LVIS_1103
Phage terminase large subunit.
 
  
 0.962
LVIS_1101
Phage Mu protein F like protein.
 
    0.949
LVIS_1100
Hypothetical protein.
 
    0.898
LVIS_1098
Hypothetical protein.
 
     0.875
LVIS_1105
Hypothetical protein.
 
  
 0.862
LVIS_1082
Phage Mu gp47 related protein.
 
    0.828
LVIS_1096
Hypothetical protein.
 
    0.826
LVIS_1086
Hypothetical protein.
 
     0.806
LVIS_1081
Hypothetical protein.
 
     0.801
LVIS_1088
SLT domain protein.
 
   
 0.796
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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