STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1197Type II secretory pathway/competence component. (326 aa)    
Predicted Functional Partners:
LVIS_1198
Type II secretory pathway/competence component, ATPase.
 
 0.995
LVIS_1196
Competence protein ComGC.
  
  
 0.959
LVIS_1696
Type II secretory pathway, prepilin signal peptidase PulO related peptidase.
 
  
 0.842
LVIS_1395
Predicted hydrolase (metallo-beta-lactamase superfamily).
 
  
 0.816
LVIS_1193
Competence protein ComGF.
       0.773
LVIS_1194
Hypothetical protein.
       0.773
LVIS_1195
Hypothetical protein.
       0.773
LVIS_1397
DNA uptake protein related DNA-binding protein.
  
  
 0.673
LVIS_1191
Adenine-specific DNA methylase.
 
     0.669
LVIS_1199
Hypothetical protein.
       0.654
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.