Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_0285 | LVIS_0302 | LVIS_0285 | LVIS_0302 | Transcriptional regulator. | Hypothetical protein. | 0.636 |
LVIS_0285 | LVIS_1390 | LVIS_0285 | LVIS_1390 | Transcriptional regulator. | BS_ysoA related protein with TPR repeats. | 0.644 |
LVIS_0285 | LVIS_1477 | LVIS_0285 | LVIS_1477 | Transcriptional regulator. | Competence protein. | 0.641 |
LVIS_0285 | rexB | LVIS_0285 | LVIS_2268 | Transcriptional regulator. | DNA helicase/exodeoxyribonuclease V, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. | 0.465 |
LVIS_0302 | LVIS_0285 | LVIS_0302 | LVIS_0285 | Hypothetical protein. | Transcriptional regulator. | 0.636 |
LVIS_0302 | LVIS_1390 | LVIS_0302 | LVIS_1390 | Hypothetical protein. | BS_ysoA related protein with TPR repeats. | 0.766 |
LVIS_0302 | LVIS_1477 | LVIS_0302 | LVIS_1477 | Hypothetical protein. | Competence protein. | 0.696 |
LVIS_0302 | rexB | LVIS_0302 | LVIS_2268 | Hypothetical protein. | DNA helicase/exodeoxyribonuclease V, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. | 0.518 |
LVIS_0891 | LVIS_1390 | LVIS_0891 | LVIS_1390 | Glycosyltransferase. | BS_ysoA related protein with TPR repeats. | 0.764 |
LVIS_1390 | LVIS_0285 | LVIS_1390 | LVIS_0285 | BS_ysoA related protein with TPR repeats. | Transcriptional regulator. | 0.644 |
LVIS_1390 | LVIS_0302 | LVIS_1390 | LVIS_0302 | BS_ysoA related protein with TPR repeats. | Hypothetical protein. | 0.766 |
LVIS_1390 | LVIS_0891 | LVIS_1390 | LVIS_0891 | BS_ysoA related protein with TPR repeats. | Glycosyltransferase. | 0.764 |
LVIS_1390 | LVIS_1477 | LVIS_1390 | LVIS_1477 | BS_ysoA related protein with TPR repeats. | Competence protein. | 0.670 |
LVIS_1390 | alaS | LVIS_1390 | LVIS_1223 | BS_ysoA related protein with TPR repeats. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.764 |
LVIS_1390 | dnaK | LVIS_1390 | LVIS_1329 | BS_ysoA related protein with TPR repeats. | Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.753 |
LVIS_1390 | rexB | LVIS_1390 | LVIS_2268 | BS_ysoA related protein with TPR repeats. | DNA helicase/exodeoxyribonuclease V, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. | 0.722 |
LVIS_1390 | rnj | LVIS_1390 | LVIS_1391 | BS_ysoA related protein with TPR repeats. | Predicted hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.690 |
LVIS_1390 | rpoA | LVIS_1390 | LVIS_1664 | BS_ysoA related protein with TPR repeats. | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.610 |
LVIS_1390 | tuf | LVIS_1390 | LVIS_1389 | BS_ysoA related protein with TPR repeats. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.672 |
LVIS_1477 | LVIS_0285 | LVIS_1477 | LVIS_0285 | Competence protein. | Transcriptional regulator. | 0.641 |
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