Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_1343 | LVIS_1377 | LVIS_1343 | LVIS_1377 | RseP peptidase. Metallo peptidase. MEROPS family M50B. | Exonuclease RecJ. | 0.491 |
LVIS_1343 | LVIS_1458 | LVIS_1343 | LVIS_1458 | RseP peptidase. Metallo peptidase. MEROPS family M50B. | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | 0.492 |
LVIS_1343 | topA | LVIS_1343 | LVIS_0798 | RseP peptidase. Metallo peptidase. MEROPS family M50B. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.562 |
LVIS_1377 | LVIS_1343 | LVIS_1377 | LVIS_1343 | Exonuclease RecJ. | RseP peptidase. Metallo peptidase. MEROPS family M50B. | 0.491 |
LVIS_1377 | LVIS_1395 | LVIS_1377 | LVIS_1395 | Exonuclease RecJ. | Predicted hydrolase (metallo-beta-lactamase superfamily). | 0.725 |
LVIS_1377 | LVIS_1458 | LVIS_1377 | LVIS_1458 | Exonuclease RecJ. | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | 0.531 |
LVIS_1377 | polA | LVIS_1377 | LVIS_1042 | Exonuclease RecJ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.725 |
LVIS_1377 | recR | LVIS_1377 | LVIS_0602 | Exonuclease RecJ. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.647 |
LVIS_1377 | topA | LVIS_1377 | LVIS_0798 | Exonuclease RecJ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.600 |
LVIS_1395 | LVIS_1377 | LVIS_1395 | LVIS_1377 | Predicted hydrolase (metallo-beta-lactamase superfamily). | Exonuclease RecJ. | 0.725 |
LVIS_1395 | LVIS_1458 | LVIS_1395 | LVIS_1458 | Predicted hydrolase (metallo-beta-lactamase superfamily). | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | 0.588 |
LVIS_1395 | polA | LVIS_1395 | LVIS_1042 | Predicted hydrolase (metallo-beta-lactamase superfamily). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.408 |
LVIS_1458 | LVIS_1343 | LVIS_1458 | LVIS_1343 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | RseP peptidase. Metallo peptidase. MEROPS family M50B. | 0.492 |
LVIS_1458 | LVIS_1377 | LVIS_1458 | LVIS_1377 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | Exonuclease RecJ. | 0.531 |
LVIS_1458 | LVIS_1395 | LVIS_1458 | LVIS_1395 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | Predicted hydrolase (metallo-beta-lactamase superfamily). | 0.588 |
LVIS_1458 | LVIS_1459 | LVIS_1458 | LVIS_1459 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.752 |
LVIS_1458 | LVIS_2063 | LVIS_1458 | LVIS_2063 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.765 |
LVIS_1458 | LVIS_2065 | LVIS_1458 | LVIS_2065 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | Effector of nucleoid occlusion Noc; Belongs to the ParB family. | 0.736 |
LVIS_1458 | divIB | LVIS_1458 | LVIS_1448 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.544 |
LVIS_1458 | polA | LVIS_1458 | LVIS_1042 | DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.628 |
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