Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_1499 | LVIS_1500 | LVIS_1499 | LVIS_1500 | Aspartate racemase. | Predicted ATP-grasp enzyme. | 0.961 |
LVIS_1499 | LVIS_1501 | LVIS_1499 | LVIS_1501 | Aspartate racemase. | Asparagine synthase (glutamine-hydrolyzing). | 0.980 |
LVIS_1499 | murE | LVIS_1499 | LVIS_0070 | Aspartate racemase. | UDP-N-acetylmuramyl tripeptide synthase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | 0.672 |
LVIS_1500 | LVIS_1499 | LVIS_1500 | LVIS_1499 | Predicted ATP-grasp enzyme. | Aspartate racemase. | 0.961 |
LVIS_1500 | LVIS_1501 | LVIS_1500 | LVIS_1501 | Predicted ATP-grasp enzyme. | Asparagine synthase (glutamine-hydrolyzing). | 0.777 |
LVIS_1500 | ftsA | LVIS_1500 | LVIS_1447 | Predicted ATP-grasp enzyme. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.730 |
LVIS_1500 | murE | LVIS_1500 | LVIS_0070 | Predicted ATP-grasp enzyme. | UDP-N-acetylmuramyl tripeptide synthase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | 0.892 |
LVIS_1500 | rpmF | LVIS_1500 | LVIS_1023 | Predicted ATP-grasp enzyme. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.730 |
LVIS_1501 | LVIS_1499 | LVIS_1501 | LVIS_1499 | Asparagine synthase (glutamine-hydrolyzing). | Aspartate racemase. | 0.980 |
LVIS_1501 | LVIS_1500 | LVIS_1501 | LVIS_1500 | Asparagine synthase (glutamine-hydrolyzing). | Predicted ATP-grasp enzyme. | 0.777 |
LVIS_1501 | murE | LVIS_1501 | LVIS_0070 | Asparagine synthase (glutamine-hydrolyzing). | UDP-N-acetylmuramyl tripeptide synthase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | 0.440 |
ftsA | LVIS_1500 | LVIS_1447 | LVIS_1500 | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | Predicted ATP-grasp enzyme. | 0.730 |
ftsA | rpmF | LVIS_1447 | LVIS_1023 | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.766 |
murE | LVIS_1499 | LVIS_0070 | LVIS_1499 | UDP-N-acetylmuramyl tripeptide synthase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | Aspartate racemase. | 0.672 |
murE | LVIS_1500 | LVIS_0070 | LVIS_1500 | UDP-N-acetylmuramyl tripeptide synthase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | Predicted ATP-grasp enzyme. | 0.892 |
murE | LVIS_1501 | LVIS_0070 | LVIS_1501 | UDP-N-acetylmuramyl tripeptide synthase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | Asparagine synthase (glutamine-hydrolyzing). | 0.440 |
rpmF | LVIS_1500 | LVIS_1023 | LVIS_1500 | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | Predicted ATP-grasp enzyme. | 0.730 |
rpmF | ftsA | LVIS_1023 | LVIS_1447 | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.766 |