STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1560Hypothetical protein. (503 aa)    
Predicted Functional Partners:
LVIS_0391
Predicted outer membrane protein.
 
   
 0.776
LVIS_1182
Cell surface protein.
  
     0.773
LVIS_0251
Cell surface protein.
  
     0.770
LVIS_0165
Predicted signal transduction protein with a C-terminal ATPase domain.
  
     0.765
LVIS_0419
Hypothetical protein.
  
  
 0.753
LVIS_2300
Uncharacterized protein containing NRPS condensation (elongation) domain.
  
     0.750
LVIS_1760
Hypothetical protein.
  
    0.737
LVIS_0164
Predicted signal transduction protein with a C-terminal ATPase domain.
  
     0.735
LVIS_1016
Hypothetical protein.
  
     0.722
LVIS_0820
Glycopeptide antibiotics resistance protein.
  
     0.719
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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