Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LVIS_0164 | LVIS_0165 | Predicted signal transduction protein with a C-terminal ATPase domain. | Predicted signal transduction protein with a C-terminal ATPase domain. | 0.983 |
LVIS_0164 | LVIS_0391 | Predicted signal transduction protein with a C-terminal ATPase domain. | Predicted outer membrane protein. | 0.707 |
LVIS_0164 | LVIS_0419 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.766 |
LVIS_0164 | LVIS_0820 | Predicted signal transduction protein with a C-terminal ATPase domain. | Glycopeptide antibiotics resistance protein. | 0.513 |
LVIS_0164 | LVIS_1016 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.523 |
LVIS_0164 | LVIS_1182 | Predicted signal transduction protein with a C-terminal ATPase domain. | Cell surface protein. | 0.582 |
LVIS_0164 | LVIS_1560 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.735 |
LVIS_0164 | LVIS_1760 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.734 |
LVIS_0164 | LVIS_2300 | Predicted signal transduction protein with a C-terminal ATPase domain. | Uncharacterized protein containing NRPS condensation (elongation) domain. | 0.725 |
LVIS_0165 | LVIS_0164 | Predicted signal transduction protein with a C-terminal ATPase domain. | Predicted signal transduction protein with a C-terminal ATPase domain. | 0.983 |
LVIS_0165 | LVIS_0251 | Predicted signal transduction protein with a C-terminal ATPase domain. | Cell surface protein. | 0.547 |
LVIS_0165 | LVIS_0391 | Predicted signal transduction protein with a C-terminal ATPase domain. | Predicted outer membrane protein. | 0.749 |
LVIS_0165 | LVIS_0419 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.775 |
LVIS_0165 | LVIS_1016 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.648 |
LVIS_0165 | LVIS_1182 | Predicted signal transduction protein with a C-terminal ATPase domain. | Cell surface protein. | 0.654 |
LVIS_0165 | LVIS_1560 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.765 |
LVIS_0165 | LVIS_1760 | Predicted signal transduction protein with a C-terminal ATPase domain. | Hypothetical protein. | 0.771 |
LVIS_0165 | LVIS_2300 | Predicted signal transduction protein with a C-terminal ATPase domain. | Uncharacterized protein containing NRPS condensation (elongation) domain. | 0.762 |
LVIS_0251 | LVIS_0165 | Cell surface protein. | Predicted signal transduction protein with a C-terminal ATPase domain. | 0.547 |
LVIS_0251 | LVIS_0391 | Cell surface protein. | Predicted outer membrane protein. | 0.704 |
page 1 of 5