Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_0283 | LVIS_1711 | LVIS_0283 | LVIS_1711 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Deoxynucleoside kinase. | 0.555 |
LVIS_0379 | LVIS_1241 | LVIS_0379 | LVIS_1241 | Predicted nucleoside-diphosphate-sugar epimerase. | Predicted Zn-dependent peptidase. | 0.770 |
LVIS_0379 | LVIS_1242 | LVIS_0379 | LVIS_1242 | Predicted nucleoside-diphosphate-sugar epimerase. | Predicted Zn-dependent peptidase. | 0.770 |
LVIS_0379 | LVIS_1711 | LVIS_0379 | LVIS_1711 | Predicted nucleoside-diphosphate-sugar epimerase. | Deoxynucleoside kinase. | 0.713 |
LVIS_0379 | LVIS_1777 | LVIS_0379 | LVIS_1777 | Predicted nucleoside-diphosphate-sugar epimerase. | Hypothetical protein. | 0.967 |
LVIS_0379 | acpP | LVIS_0379 | LVIS_0934 | Predicted nucleoside-diphosphate-sugar epimerase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.709 |
LVIS_0379 | acpP-2 | LVIS_0379 | LVIS_0953 | Predicted nucleoside-diphosphate-sugar epimerase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.709 |
LVIS_0379 | dltC | LVIS_0379 | LVIS_1324 | Predicted nucleoside-diphosphate-sugar epimerase. | D-alanyl carrier protein; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.709 |
LVIS_1241 | LVIS_0379 | LVIS_1241 | LVIS_0379 | Predicted Zn-dependent peptidase. | Predicted nucleoside-diphosphate-sugar epimerase. | 0.770 |
LVIS_1241 | LVIS_1242 | LVIS_1241 | LVIS_1242 | Predicted Zn-dependent peptidase. | Predicted Zn-dependent peptidase. | 0.982 |
LVIS_1241 | LVIS_1711 | LVIS_1241 | LVIS_1711 | Predicted Zn-dependent peptidase. | Deoxynucleoside kinase. | 0.497 |
LVIS_1241 | LVIS_1777 | LVIS_1241 | LVIS_1777 | Predicted Zn-dependent peptidase. | Hypothetical protein. | 0.582 |
LVIS_1241 | acpP | LVIS_1241 | LVIS_0934 | Predicted Zn-dependent peptidase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.493 |
LVIS_1241 | acpP-2 | LVIS_1241 | LVIS_0953 | Predicted Zn-dependent peptidase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.493 |
LVIS_1241 | dltC | LVIS_1241 | LVIS_1324 | Predicted Zn-dependent peptidase. | D-alanyl carrier protein; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.493 |
LVIS_1242 | LVIS_0379 | LVIS_1242 | LVIS_0379 | Predicted Zn-dependent peptidase. | Predicted nucleoside-diphosphate-sugar epimerase. | 0.770 |
LVIS_1242 | LVIS_1241 | LVIS_1242 | LVIS_1241 | Predicted Zn-dependent peptidase. | Predicted Zn-dependent peptidase. | 0.982 |
LVIS_1242 | LVIS_1711 | LVIS_1242 | LVIS_1711 | Predicted Zn-dependent peptidase. | Deoxynucleoside kinase. | 0.497 |
LVIS_1242 | LVIS_1777 | LVIS_1242 | LVIS_1777 | Predicted Zn-dependent peptidase. | Hypothetical protein. | 0.582 |
LVIS_1242 | acpP | LVIS_1242 | LVIS_0934 | Predicted Zn-dependent peptidase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.493 |
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