Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1925Predicted sugar phosphatase of HAD family. (230 aa)    
Predicted Functional Partners:
LVIS_0358
Maltose phosphorylase.
 
 0.998
LVIS_1517
Trehalose and maltose hydrolase (possible phosphorylase).
  
 0.981
LVIS_1518
Predicted sugar phosphatase of HAD family.
  
  
 
0.908
LVIS_0555
Predicted phosphatase.
 
    0.617
LVIS_1926
Nucleotide-binding protein, UspA family.
  
    0.501
LVIS_1907
Alpha-phosphoglucomutase.
  
 
 0.478
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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